Factsheet for Os03t0750800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0968800-00
Os02t0677300-02
Os04t0572400-00
Os06t0127100-01
Os06t0165600-01
Os09t0522100-00
Os09t0522200-01
Os10t0415900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	Os10t0415900-01	AT3G54610.1	16603259
AT4G16420.1	Os10t0415900-01	AT3G54610.1	21798944
AT4G16420.1	Os01t0968800-00	AT4G25490.1	16603259
AT4G16420.1	Os02t0677300-02	AT4G25490.1	16603259
AT4G16420.1	Os04t0572400-00	AT4G25490.1	16603259
AT4G16420.1	Os06t0127100-01	AT4G25490.1	16603259
AT4G16420.1	Os06t0165600-01	AT4G25490.1	16603259
AT4G16420.1	Os09t0522100-00	AT4G25490.1	16603259
AT4G16420.1	Os09t0522200-01	AT4G25490.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034033_P002	Maize	nucleus	89.59	89.91
EER90868	Sorghum	nucleus	89.59	89.91
TraesCS5D01G400100.2	Wheat	nucleus	89.24	89.08
TraesCS5A01G390300.2	Wheat	nucleus	89.24	89.08
TraesCS5B01G395200.1	Wheat	nucleus	84.48	88.7
Zm00001d013265_P003	Maize	nucleus	88.18	88.5
HORVU5Hr1G095400.7	Barley	nucleus	88.54	88.38
GSMUA_Achr6P00130_001	Banana	nucleus	73.55	72.65
VIT_00s0194g00130.t01	Wine grape	nucleus	61.9	62.68
KRH36579	Soybean	nucleus	59.44	60.83
KRH11557	Soybean	nucleus	58.55	59.93
CDX90526	Canola	nucleus	48.15	58.21
AT4G16420.1	Thale cress	nucleus	49.91	58.11
Bra012721.1-P	Field mustard	nucleus	47.97	58.0
CDY09696	Canola	nucleus	47.97	58.0
CDY34465	Canola	nucleus	15.52	57.89
CDY42533	Canola	nucleus, plastid	49.38	57.61
VIT_12s0057g00920.t01	Wine grape	nucleus	57.85	57.44
Bra040578.1-P	Field mustard	nucleus	49.03	57.2
CDY69435	Canola	nucleus	49.03	57.2
Solyc07g047610.2.1	Tomato	nucleus	56.08	56.79
Solyc05g054200.2.1	Tomato	nucleus	53.44	55.8
PGSC0003DMT400021785	Potato	nucleus	53.09	55.43
KRG90028	Soybean	nucleus	25.57	55.34
KRH17664	Soybean	nucleus	53.79	53.32
KRG90027	Soybean	nucleus	7.58	51.19
CDY35959	Canola	nucleus	46.91	48.1
CDY28021	Canola	nucleus	46.38	47.99
Bra029673.1-P	Field mustard	nucleus	46.38	47.91
AT3G07740.4	Thale cress	nucleus	46.03	47.03

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	MapMan:15.3.4.1.2	MapMan:15.5.2.2	Gene3D:3.30.60.90	EntrezGene:4334126
ProteinID:AAR87248.1	ProteinID:ABF98900.1	ProteinID:ABF98901.1	InterPro:ADA2_plants	EMBL:AK072597	InterPro:Ada2/TADA2
ProteinID:BAF13201.1	ProteinID:BAS86407.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0003713	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740
GO:GO:0019538	GO:GO:0035065	GO:GO:0035066	GO:GO:0046872	GO:GO:1903508	InterPro:Homeobox-like_sf
InterPro:IPR000433	InterPro:IPR017884	EnsemblPlantsGene:Os03g0750800	EnsemblPlants:Os03t0750800-01	PFAM:PF00249	PFAM:PF00569
PIRSF:PIRSF025024	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS51293	PANTHER:PTHR12374	PANTHER:PTHR12374:SF39
UniProt:Q75LL6	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF57850	UniParc:UPI0000DB4393	RefSeq:XP_015631988.1	InterPro:Znf_ZZ	SEG:seg	:

Description

SWIRM domain-containing protein HXA701Similar to Transcriptional adaptor (Fragment). (Os03t0750800-01);Similar to cDNA clone:J023128E10, full insert sequence. (Os03t0750800-02);Similar to cDNA clone:J023128E10, full insert sequence. (Os03t0750800-03)

Coordinates

chr3:-:30935662..30942983

Molecular Weight (calculated)

63555.2 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.793

Length

567 amino acids

Sequence
(BLAST)

001: MGRSRGVPNS GDDETNHRSK RRRVASSGDA PDSLSAACGG AGEGGGKKAL YHCNYCNKDI SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD
101: NLSFPLICPD WNADEEILLL EGIEMYGLGN WAEVAEHVGT KTKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA KVQGESKKVL PGDLTPKDES
201: PFSPPRVKVE DALGEGLAGR SPSHIAGGAN KKASNVGQFK DGANVAKVED GHVDRSIGVK KPRYSADEGP SLTELSGYNS KRHEFDPEYD NDAEQALAEM
301: EFKETDSETD RELKLRVLRI YLSRLDERKR RKEFILERNL LFPNPLEKDL TNEDKEVYHR YKVFMRFLSK EEHEALVRSV LEERKIRRRI QELQECRSAG
401: CRTLAEAKIH IEQKRKKEHE VNAQKAKESG QLLSNTKVVH KTNRPMKIES DGNLDQKKGG ASLDSTGRDS PKTTGHAGTK HWDDWDIVGF PGAELLSTSE
501: KNLCCQNRLL PNHYLKMQEV LMQEIFKGSV AKKEDAHVLF KVDPAKVDNV YDMVTKKLGT NEEAPTV

Best Arabidopsis Sequence Match ( AT4G16420.1 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.