Factsheet for VIT_00s0194g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0141g00140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16420.1	VIT_07s0141g00140.t01	AT3G54610.1	16603259
AT4G16420.1	VIT_07s0141g00140.t01	AT3G54610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11557	Soybean	nucleus	73.39	74.19
KRH36579	Soybean	nucleus	72.32	73.1
AT4G16420.1	Thale cress	nucleus	60.71	69.82
PGSC0003DMT400021785	Potato	nucleus	66.79	68.88
Solyc05g054200.2.1	Tomato	nucleus	66.07	68.14
CDX90526	Canola	nucleus	56.79	67.8
CDY42533	Canola	nucleus, plastid	58.75	67.7
CDY69435	Canola	nucleus	58.75	67.7
Bra012721.1-P	Field mustard	nucleus	56.61	67.59
CDY09696	Canola	nucleus	56.61	67.59
Bra040578.1-P	Field mustard	nucleus	58.57	67.49
CDY34465	Canola	nucleus	18.04	66.45
Os03t0750800-01	Rice	nucleus	62.68	61.9
EER90868	Sorghum	nucleus	61.96	61.42
Zm00001d034033_P002	Maize	nucleus	61.79	61.24
Zm00001d013265_P003	Maize	nucleus	61.43	60.88
VIT_12s0057g00920.t01	Wine grape	nucleus	61.43	60.25
TraesCS5A01G390300.2	Wheat	nucleus	61.07	60.21
TraesCS5D01G400100.2	Wheat	nucleus	61.07	60.21
HORVU5Hr1G095400.7	Barley	nucleus	60.89	60.04
GSMUA_Achr6P00130_001	Banana	nucleus	61.25	59.76
TraesCS5B01G395200.1	Wheat	nucleus	56.96	59.07

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.10.780	EntrezGene:100266159	wikigene:100266159	MapMan:15.3.4.1.2	MapMan:15.5.2.2
Gene3D:3.30.60.90	InterPro:ADA2_plants	InterPro:Ada2/TADA2	ProteinID:CCB50051	ProteinID:CCB50051.1	UniProt:F6HCV6
EMBL:FN595527	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700
GO:GO:0003713	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009631	GO:GO:0009719	GO:GO:0009733
GO:GO:0009735	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538
GO:GO:0035065	GO:GO:0035066	GO:GO:0042127	GO:GO:0046872	GO:GO:1903508	InterPro:Homeobox-like_sf
InterPro:IPR000433	InterPro:IPR007526	InterPro:IPR017884	EntrezGene:LOC100266159	wikigene:LOC100266159	PFAM:PF00249
PFAM:PF00569	PIRSF:PIRSF025024	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS50934	PFscan:PS51293
PANTHER:PTHR12374	PANTHER:PTHR12374:SF39	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00291	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF57850	InterPro:SWIRM	UniParc:UPI0002109B07	ArrayExpress:VIT_00s0194g00130	EnsemblPlantsGene:VIT_00s0194g00130
EnsemblPlants:VIT_00s0194g00130.t01	RefSeq:XP_002262737	RefSeq:XP_002262737.2	RefSeq:XP_010646250.1	RefSeq:XP_010646252.1	RefSeq:XP_010646253.1
RefSeq:XP_010646254.1	RefSeq:XP_010646255.1	RefSeq:XP_019073629.1	InterPro:Znf_ZZ	SEG:seg	:

Description

Transcriptional adapter [Source:UniProtKB/TrEMBL;Acc:F6HCV6]

Coordinates

chrUn:+:10627944..10633125

Molecular Weight (calculated)

62829.0 Da

IEP (calculated)

6.617

GRAVY (calculated)

-0.756

Length

560 amino acids

Sequence
(BLAST)

001: MGRSRGVFQS PDEDPTQRSR RKKNASSGEN LDSAAAGQGS SEGKKALYHC NYCNKDITGK IRIKCAVCPD FDLCIECFSV GAEVTSHKSN HPYRVMDNLS
101: FPLICPDWNA DDEILLLEGI EMYGLGNWTE VAEHVGTKTK EPCIEHYANV YMNSPYFPLP DLSHVVGKNR KELLAMAKGH SDDKKGFSLL GELTLKEESP
201: FSPSRVKVED THKGGPSGRL LSVLNADVDS TVRSSGTNVA ATATVKKASN MAQVKDGPNV VKVEDPQIDR NFGGKKPNSG AEGSSLVELS GYNSKRHEFD
301: PEYDNDAEQL LAEMEFKEPD TEDERELKLR VLRIYAKRLD ERKRRKDFIL ERNLLHPNQF EKDLSPEEKE LCQRYDVFMR FHSKEEHEDL LKTIISEHRT
401: LKRIQELKEA RAAGCRTSAE ADRYLEQKRR REAEEHARRV KESAQGGTSG QGAQNVFMAS ESVGKDANSR TAGQATSSSV NDFDVMGCPE AELLSETEKR
501: LCSEIRLAPA HYLKMQETLS VEIFQGNVSK KSDAHRLFKI EPSKVDRVYD MLAKKGIAQL

Best Arabidopsis Sequence Match ( AT4G16420.1 )
(BLAST)

001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL
101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV
201: EDTQKESFVD RSFGGKKPVS TSVNNSLVEL SNYNQKREEF DPEYDNDAEQ LLAEMEFKEN DTPEEHELKL RVLRIYSKRL DERKRRKEFI IERNLLYPNP
301: FEKDLSQEEK VQCRRLDVFM RFHSKEEHDE LLRNVVSEYR MVKRLKDLKE AQVAGCRSTA EAERYLGRKR KRENEEGMNR GKESGQFGQI AGEMGSRPPV
401: QASSSYVNDL DLIGFTESQL LSESEKRLCS EVKLVPPVYL QMQQVMSHEI FKGNVTKKSD AYSLFKIDPT KVDRVYDMLV KKGIAQL

Arabidopsis Description

ADA2BTranscriptional adapter ADA2b [Source:UniProtKB/Swiss-Prot;Acc:Q9ATB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.