Factsheet for VIT_07s0141g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	VIT_00s0194g00130.t01	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g045390.1.1	Tomato	nucleus	6.47	85.37
KRG95607	Soybean	plastid	77.82	77.96
KRH67282	Soybean	nucleus	77.26	76.98
Solyc10g045400.1.1	Tomato	nucleus	54.9	73.51
VIT_07s0141g00150.t01	Wine grape	cytosol	40.67	70.06
GSMUA_Achr8P04400_001	Banana	plastid	68.76	69.4
AT3G54610.1	Thale cress	plastid	72.27	68.84
CDY64337	Canola	plastid	66.91	66.06
Bra014803.1-P	Field mustard	plastid	66.91	66.06
CDY55833	Canola	plastid	66.91	65.82
Os10t0415900-01	Rice	nucleus, plastid	62.11	65.75
Bra014800.1-P	Field mustard	plastid	63.59	65.52
CDX76140	Canola	plastid	63.4	65.33
CDY13219	Canola	nucleus, plastid	62.85	65.01
TraesCS1A01G138200.2	Wheat	plastid	59.52	63.51
TraesCSU01G003200.1	Wheat	plastid	59.52	63.51
TraesCS1D01G134200.1	Wheat	plastid	59.33	63.31
OQU91781	Sorghum	plastid	59.89	62.91
HORVU1Hr1G034070.1	Barley	nucleus, plastid	46.95	61.65
CDX78250	Canola	cytosol, nucleus, plastid	7.39	60.61
Zm00001d014175_P004	Maize	plastid	59.89	58.17
Bra007082.1-P	Field mustard	nucleus	23.66	49.61
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.5	38.98

Protein Annotations

Gene3D:1.20.920.10	EntrezGene:100252806	wikigene:100252806	MapMan:15.3.4.1.1	Gene3D:3.40.630.30	EMBL:AM461575
InterPro:Acyl_CoA_acyltransferase	InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS	ProteinID:CAN79015	ProteinID:CAN79015.1
ProteinID:CCB44696	ProteinID:CCB44696.1	UniProt:F6GXL0	EMBL:FN594965	InterPro:GCN5	InterPro:GNAT_dom
GO:GO:0000003	GO:GO:0000123	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0007275	GO:GO:0008080	GO:GO:0008150
GO:GO:0008152	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010015	GO:GO:0010321	GO:GO:0010484	GO:GO:0016043	GO:GO:0016407
GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000182	InterPro:IPR001487	InterPro:IPR036427
EntrezGene:LOC100252806	wikigene:LOC100252806	PFAM:PF00439	PFAM:PF00583	PRINTS:PR00503	ScanProsite:PS00633
PFscan:PS50014	PFscan:PS51186	PANTHER:PTHR22880	PANTHER:PTHR22880:SF124	SMART:SM00297	SUPFAM:SSF47370
SUPFAM:SSF55729	UniParc:UPI000210950C	ArrayExpress:VIT_07s0141g00140	EnsemblPlantsGene:VIT_07s0141g00140	EnsemblPlants:VIT_07s0141g00140.t01	RefSeq:XP_002275146
RefSeq:XP_002275146.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:78073..88811

Molecular Weight (calculated)

60639.2 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.605

Length

541 amino acids

Sequence
(BLAST)

001: MDTHSTHPTA PVRSRSSQSP SHSASASASA SATSSIHKRK LTSDDHAPPF SADITSNDDL DSISARAGGP GSDSDDDSEE DAVVDDEEDD FDNESMRTFT
101: TARLDNSATA SAAVRNTKIK PENSTVKVES SEIGKDGGSS AAAPVGTSSV PAIVVKEDAT KIFTENMQTS GTYCAREESL KREEEAGRLK FVCLGNDGVD
201: QHMIWLIGLK NVFARQLPNM PKEYIVRLVM DRSHKSVMVI RRNQVVGGIT YRPYVSQKFG EIAFCAITAD EQVKGYGTRL MNHLKQYARD IDGLTHFLTY
301: ADNNAVGYFI KQGFTKEISL EKDRWQGYIK DYDGGILMEC KIDPKLPYTD LSTMIRRQRQ AIDEKIRQLS NCHIVYTGID FQKNEVGIPR RIIKVEEIPG
401: LKEAGWTPDQ YGHSRFRTTS ASADRASNRK SLTAFMRSLL KLMHDHPDAW PFKEPVDARD VPDYYDIIKD PMDLKTMSKR VESEQYYITL EMFLTDVRTM
501: FKNARTYNSP DTIYYKCATR LESFFSGKVQ AGLQSSSKIQ Q

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.