Factsheet for Bra007082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012721.1-P
Bra040578.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	Bra012721.1-P	AT4G16420.1	16603259
AT3G54610.1	Bra040578.1-P	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78250	Canola	cytosol, nucleus, plastid	24.03	93.94
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.6	82.2
Solyc10g045390.1.1	Tomato	nucleus	6.98	43.9
Bra014803.1-P	Field mustard	plastid	60.85	28.65
Bra014800.1-P	Field mustard	plastid	56.98	28.0
AT3G54610.1	Thale cress	plastid	60.47	27.46
KRG95607	Soybean	plastid	53.1	25.37
KRH67282	Soybean	nucleus	53.1	25.23
TraesCSU01G003200.1	Wheat	plastid	48.45	24.65
TraesCS1D01G134200.1	Wheat	plastid	48.06	24.46
TraesCS1A01G138200.2	Wheat	plastid	48.06	24.46
Os10t0415900-01	Rice	nucleus, plastid	48.06	24.27
OQU91781	Sorghum	plastid	47.29	23.69
VIT_07s0141g00140.t01	Wine grape	plastid	49.61	23.66
GSMUA_Achr8P04400_001	Banana	plastid	47.29	22.76
Zm00001d014175_P004	Maize	plastid	46.12	21.36
HORVU1Hr1G034070.1	Barley	nucleus, plastid	24.81	15.53
Solyc10g045400.1.1	Tomato	nucleus	20.93	13.37

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.3.4.1.1	Gene3D:3.40.630.30	EnsemblPlantsGene:Bra007082	EnsemblPlants:Bra007082.1	EnsemblPlants:Bra007082.1-P
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS	InterPro:GCN5	GO:GO:0003674	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001487
InterPro:IPR036427	UniProt:M4CS90	PFAM:PF00439	PRINTS:PR00503	ScanProsite:PS00633	PFscan:PS50014
PANTHER:PTHR22880	PANTHER:PTHR22880:SF124	SMART:SM00297	SUPFAM:SSF47370	UniParc:UPI0002542927	:

Description

AT3G54610 (E=3e-073) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase

Coordinates

chrA09:+:27204915..27207654

Molecular Weight (calculated)

29297.8 Da

IEP (calculated)

6.032

GRAVY (calculated)

-0.384

Length

258 amino acids

Sequence
(BLAST)

001: MVNHSPEREC EIPGGHALWQ SGVVRIRTRV LWGSTEQISG GFTKELYLEK DVRNGFIKDH DGGLLMECKI DQKLPYTDLS CMNTPAKKIK PLNIFKLLMK
101: YFLEPSSSTV YEAVVSLSIC SLFTSDVVDN SGDAGWTPDQ WGHTRYKLFN GFVDNATKQK QLNAPIRTMQ DHADAWPFKA PVDALDVADY YDIIKDPIDL
201: KTIAKRVESE EYYVTLDMFV ADARRMFNNC RTYNSPDTIY YKCATSQVGN TSSSPVWC

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.