Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g054200.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54610.1 | Solyc05g054200.2.1 | AT4G16420.1 | 16603259 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78250 | Canola | cytosol, nucleus, plastid | 43.9 | 27.27 |
| Bra007082.1-P | Field mustard | nucleus | 43.9 | 6.98 |
| KRG95607 | Soybean | plastid | 85.37 | 6.48 |
| VIT_07s0141g00140.t01 | Wine grape | plastid | 85.37 | 6.47 |
| KRH67282 | Soybean | nucleus | 85.37 | 6.45 |
| CDY64337 | Canola | plastid | 73.17 | 5.47 |
| Bra014803.1-P | Field mustard | plastid | 73.17 | 5.47 |
| AT3G54610.1 | Thale cress | plastid | 75.61 | 5.46 |
| CDY55833 | Canola | plastid | 73.17 | 5.45 |
| CDY13219 | Canola | nucleus, plastid | 63.41 | 4.97 |
| CDX76140 | Canola | plastid | 63.41 | 4.95 |
| Bra014800.1-P | Field mustard | plastid | 63.41 | 4.95 |
| Os10t0415900-01 | Rice | nucleus, plastid | 60.98 | 4.89 |
| TraesCS1A01G138200.2 | Wheat | plastid | 58.54 | 4.73 |
| TraesCS1D01G134200.1 | Wheat | plastid | 58.54 | 4.73 |
| GSMUA_Achr8P04400_001 | Banana | plastid | 60.98 | 4.66 |
| TraesCSU01G003200.1 | Wheat | plastid | 56.1 | 4.54 |
| OQU91781 | Sorghum | plastid | 56.1 | 4.47 |
| Zm00001d014175_P004 | Maize | plastid | 56.1 | 4.13 |
| Solyc10g045400.1.1 | Tomato | nucleus | 9.76 | 0.99 |
| HORVU1Hr1G034070.1 | Barley | nucleus, plastid | 0.0 | 0.0 |
| CDX78249 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc10g045390.1.1 | EnsemblPlantsGene:Solyc10g045390.1 | Gene3D:1.20.920.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Bromodomain-like_sf | InterPro:IPR036427 | SUPFAM:SSF47370 | UniParc:UPI000276B3FB | UniProt:K4CZQ6 | MapMan:35.2 |
Description
No Description!
Coordinates
chr10:-:33243751..33243949
Molecular Weight (calculated)
4713.6 Da
IEP (calculated)
9.725
GRAVY (calculated)
-0.585
Length
41 amino acids
Sequence
(BLAST)
(BLAST)
1: MFANARTYNS PETIYYKCST RLESHFSNKV QAGLQSSIKI Q
001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ
Arabidopsis Description
HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.