CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90526
CDY09696
CDY34465
CDY42533
CDY69435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	CDX90526	AT4G16420.1	16603259
AT3G54610.1	CDY09696	AT4G16420.1	16603259
AT3G54610.1	CDY34465	AT4G16420.1	16603259
AT3G54610.1	CDY42533	AT4G16420.1	16603259
AT3G54610.1	CDY69435	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76140	Canola	plastid	94.07	93.71
CDY55833	Canola	plastid	88.34	84.0
CDY64337	Canola	plastid	87.95	83.94
AT3G54610.1	Thale cress	plastid	81.84	75.35
CDX78250	Canola	cytosol, nucleus, plastid	8.99	71.21
KRG95607	Soybean	plastid	69.02	66.85
KRH67282	Soybean	nucleus	68.45	65.93
Solyc10g045390.1.1	Tomato	nucleus	4.97	63.41
VIT_07s0141g00140.t01	Wine grape	plastid	65.01	62.85
Solyc10g045400.1.1	Tomato	nucleus	48.37	62.62
GSMUA_Achr8P04400_001	Banana	plastid	61.19	59.7
Os10t0415900-01	Rice	nucleus, plastid	57.94	59.3
TraesCS1A01G138200.2	Wheat	plastid	56.79	58.58
TraesCS1D01G134200.1	Wheat	plastid	56.79	58.58
TraesCSU01G003200.1	Wheat	plastid	56.79	58.58
OQU91781	Sorghum	plastid	56.79	57.67
HORVU1Hr1G034070.1	Barley	nucleus, plastid	44.74	56.8
Zm00001d014175_P004	Maize	plastid	56.6	53.14
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.09	49.15

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.3.4.1.1	Gene3D:3.40.630.30	GO:A0A078FJT8	UniProt:A0A078FJT8	InterPro:Acyl_CoA_acyltransferase
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS	EnsemblPlants:CDY13219	ProteinID:CDY13219	ProteinID:CDY13219.1
ncoils:Coil	InterPro:GCN5	InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00071120001
InterPro:IPR000182	InterPro:IPR001487	InterPro:IPR036427	PFAM:PF00439	PFAM:PF00583	PRINTS:PR00503
ScanProsite:PS00633	PFscan:PS50014	PFscan:PS51186	PANTHER:PTHR22880	PANTHER:PTHR22880:SF124	SMART:SM00297
SUPFAM:SSF47370	SUPFAM:SSF55729	UniParc:UPI0004EC15AD	SEG:seg	:	:

Description

BnaC04g26160DBnaC04g26160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJT8]

Coordinates

chrLK032032:-:607082..611214

Molecular Weight (calculated)

58500.7 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.556

Length

523 amino acids

Sequence
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASVSS SLHKRKLAAS EDHAPPSSND DLESISAARG ADSGSDPDES EDAVHDGYEE DFAPEPDQDS SIRTFTAARL
101: DPISGVNGSS RNAKIKTEEI STVELEAGTG TAGAIVPKDE SAKILTCGAY IAREEALRIE EDAGRLKFVC YSNDGVDDHM MCLIGLKNIF ARQLPNMPKE
201: YIVRLLMDRK HKSVMVLRNN EVEGGIPLVV GGITYRPYHR QRFGEIAFCA ISADEQVKGY GTRLMNHLKE HARDVDGLTH FLTYADNNAV GYFVKQSFTK
301: EIYLEKDVWH GYIKDYDGVL LMECRIDPKL KYTNLASMIS QQRQAIDEMI RELSNCQNVY QVAEFQKKEG GSSKNIRVED IPGLRDAGWT SDQWGHTRYK
401: LFSGSGDSVT KQKQLNALIR GLLKTMQDHT DAWPFIEPVD SVDVPDYYKI IKDPIDLKTI GKSVESEQYY VTLDMFVADA RRMFNNCRTY NSPDTVYYRC
501: ATKLQAHFFS KVQAALQSGA KPQ

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.