CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90526
CDY09696
CDY34465
CDY42533
CDY69435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	CDX90526	AT4G16420.1	16603259
AT3G54610.1	CDY09696	AT4G16420.1	16603259
AT3G54610.1	CDY34465	AT4G16420.1	16603259
AT3G54610.1	CDY42533	AT4G16420.1	16603259
AT3G54610.1	CDY69435	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64337	Canola	plastid	98.18	98.54
CDX76140	Canola	plastid	84.55	88.57
CDY13219	Canola	nucleus, plastid	84.0	88.34
AT3G54610.1	Thale cress	plastid	84.73	82.04
CDX78250	Canola	cytosol, nucleus, plastid	9.09	75.76
Solyc10g045390.1.1	Tomato	nucleus	5.45	73.17
KRG95607	Soybean	plastid	70.0	71.3
KRH67282	Soybean	nucleus	69.64	70.53
Solyc10g045400.1.1	Tomato	nucleus	49.45	67.33
VIT_07s0141g00140.t01	Wine grape	plastid	65.82	66.91
GSMUA_Achr8P04400_001	Banana	plastid	62.0	63.62
Os10t0415900-01	Rice	nucleus, plastid	56.73	61.06
TraesCS1A01G138200.2	Wheat	plastid	55.64	60.35
TraesCS1D01G134200.1	Wheat	plastid	55.64	60.35
TraesCSU01G003200.1	Wheat	plastid	55.64	60.35
OQU91781	Sorghum	plastid	55.82	59.61
HORVU1Hr1G034070.1	Barley	nucleus, plastid	43.45	58.01
Zm00001d014175_P004	Maize	plastid	55.27	54.58
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.09	51.69

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.3.4.1.1	Gene3D:3.40.630.30	GO:A0A078IZ87	UniProt:A0A078IZ87	InterPro:Acyl_CoA_acyltransferase
InterPro:Bromodomain	InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS	EnsemblPlants:CDY55833	ProteinID:CDY55833	ProteinID:CDY55833.1
InterPro:GCN5	InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00017382001	InterPro:IPR000182
InterPro:IPR001487	InterPro:IPR036427	PFAM:PF00439	PFAM:PF00583	PRINTS:PR00503	ScanProsite:PS00633
PFscan:PS50014	PFscan:PS51186	PANTHER:PTHR22880	PANTHER:PTHR22880:SF124	SMART:SM00297	SUPFAM:SSF47370
SUPFAM:SSF55729	UniParc:UPI0004EBE863	SEG:seg	:	:	:

Description

BnaCnng29260DBnaCnng29260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ87]

Coordinates

chrLK033432:-:24482..29056

Molecular Weight (calculated)

61191.6 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.632

Length

550 amino acids

Sequence
(BLAST)

001: MDSHSSHLNA ANRSRNSQTP SPSHSASASA SVSSSLHKRK LAATTAANAA ASEDHPPPSA SFPPSSNDDL ESISARGANS ESDPEESEDA VVDDDEEDFA
101: PEPDQDSSIR TFTAARLDPS SGANGSSRNT KIKTEISTVK LEAGTGTAGV SSVSGIVPKD ESAKISTDDD VQNCGAYIAR EEALRREEAA NRLKFVCYSN
201: DCVDEHMMCL IGLKNIFARQ LPNMPKEYIV RLLMDRKHKS VMVVRPPAGG NGITHVVGGI TYRPYHSQRF GEIAFCAITA DEQVKGYGTR LMNHLKEHAR
301: NVDGLTHFLT YADNNAVGYF VKQGFTKEIY LEKDVWHGFI KDYDGGLLME CKIDPKLPYT NLSKMIRQQR KAIDERIREL SNCQNVYQVA EFQKKEGGSP
401: KKIRVEDIPG LRDAGWTPDQ WGHTRYKLFS GSGDSVTKQK QLNALIRVLL KTMQDHSDAW PFKEPVDPLD VPDYYEIIKD PIDLKTIGKR VESEQYYVTL
501: DMFVADARRM FNNCRTYNSP DTIYYKCATR LETHFHSKVQ AALQSGAKSQ

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.