CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90526
CDY09696
CDY34465
CDY42533
CDY69435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54610.1	CDX90526	AT4G16420.1	16603259
AT3G54610.1	CDY09696	AT4G16420.1	16603259
AT3G54610.1	CDY34465	AT4G16420.1	16603259
AT3G54610.1	CDY42533	AT4G16420.1	16603259
AT3G54610.1	CDY69435	AT4G16420.1	16603259

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014800.1-P	Field mustard	plastid	99.24	99.24
CDY13219	Canola	nucleus, plastid	93.71	94.07
CDY64337	Canola	plastid	88.38	84.67
CDY55833	Canola	plastid	88.57	84.55
AT3G54610.1	Thale cress	plastid	80.95	74.82
CDX78250	Canola	cytosol, nucleus, plastid	8.76	69.7
KRG95607	Soybean	plastid	68.76	66.85
KRH67282	Soybean	nucleus	68.57	66.3
Solyc10g045390.1.1	Tomato	nucleus	4.95	63.41
VIT_07s0141g00140.t01	Wine grape	plastid	65.33	63.4
Solyc10g045400.1.1	Tomato	nucleus	48.57	63.12
GSMUA_Achr8P04400_001	Banana	plastid	60.38	59.14
Os10t0415900-01	Rice	nucleus, plastid	57.52	59.1
TraesCS1A01G138200.2	Wheat	plastid	56.19	58.19
TraesCS1D01G134200.1	Wheat	plastid	56.19	58.19
TraesCSU01G003200.1	Wheat	plastid	56.19	58.19
OQU91781	Sorghum	plastid	56.0	57.09
HORVU1Hr1G034070.1	Barley	nucleus, plastid	44.38	56.55
Zm00001d014175_P004	Maize	plastid	55.81	52.6
CDX78249	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.24	50.0

Protein Annotations

Gene3D:1.20.920.10	MapMan:15.3.4.1.1	Gene3D:3.40.630.30	GO:A0A078CGZ5	InterPro:Acyl_CoA_acyltransferase	InterPro:Bromodomain
InterPro:Bromodomain-like_sf	InterPro:Bromodomain_CS	EnsemblPlants:CDX76140	ProteinID:CDX76140	ProteinID:CDX76140.1	InterPro:GCN5
InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00126429001	InterPro:IPR000182	InterPro:IPR001487	InterPro:IPR036427	PFAM:PF00439
PFAM:PF00583	PRINTS:PR00503	ScanProsite:PS00633	PFscan:PS50014	PFscan:PS51186	PANTHER:PTHR22880
PANTHER:PTHR22880:SF124	SMART:SM00297	SUPFAM:SSF47370	SUPFAM:SSF55729	UniParc:UPI0004EF4163	SEG:seg

Description

BnaA04g04040D

Coordinates

chrLK031806:+:1265413..1269471

Molecular Weight (calculated)

58942.3 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.615

Length

525 amino acids

Sequence
(BLAST)

001: MDSHSSHLNA ANRSRSSQPP SPSHSASASS SLHKRKLAAS EDHAPPSTSF PPSSNDDLES LSAARGADSG SDPEESEYAV HDGYEEDFAP EPDQDSSIRT
101: FTAARLDVNG SSRNAKIKTE EISTVELGAG TGTAGAIAPK DEAAKILTCG AYIAREEALR REEEAGRLKF VCYSNDGVDD HMMCLIGLKN IFARQLPNMP
201: KEYIVRLLMD RKHKSVMVLR KNEVEGGIPL VVGGITYRPY HRQRFGEIAF CAISADEQVK GYGTRLMNHL KEHARDVDGL THFLTYADNN AVGYFLKQSF
301: TKEIYLEKDV WHGYIKDYDG VLLMECRIDP KLKYTNLSSM ISKQRKAIDE MIRELSNCQN VYQVAEFQKK EGGSSKNIRV EDIPGLRDAG WTPDQWGHTR
401: YTLFSGSGDS VTKQKQLNAL IRGLLKTMQD HSDAWPFKEP VDPLDVPDYY EFIKDPIDLK TIGKRVESEQ YYMTLDMFVA DTRRMFNNCR TYNSPDTVYY
501: RCATKLQAHF FSKVQAALQS GAKSQ

Best Arabidopsis Sequence Match ( AT3G54610.1 )
(BLAST)

001: MDSHSSHLNA ANRSRSSQTP SPSHSASASV TSSLHKRKLA ATTAANAAAS EDHAPPSSSF PPSSFSADTR DGALTSNDEL ESISARGADT DSDPDESEDI
101: VVDDDEDEFA PEQDQDSSIR TFTAARLDSS SGVNGSSRNT KLKTESSTVK LESSDGGKDG GSSVVGTGVS GTVGGSSISG LVPKDESVKV LAENFQTSGA
201: YIAREEALKR EEQAGRLKFV CYSNDSIDEH MMCLIGLKNI FARQLPNMPK EYIVRLLMDR KHKSVMVLRG NLVVGGITYR PYHSQKFGEI AFCAITADEQ
301: VKGYGTRLMN HLKQHARDVD GLTHFLTYAD NNAVGYFVKQ GFTKEIYLEK DVWHGFIKDY DGGLLMECKI DPKLPYTDLS SMIRQQRKAI DERIRELSNC
401: QNVYPKIEFL KNEAGIPRKI IKVEEIRGLR EAGWTPDQWG HTRFKLFNGS ADMVTNQKQL NALMRALLKT MQDHADAWPF KEPVDSRDVP DYYDIIKDPI
501: DLKVIAKRVE SEQYYVTLDM FVADARRMFN NCRTYNSPDT IYYKCATRLE THFHSKVQAG LQSGAKSQ

Arabidopsis Description

HAG1Histone acetyltransferase GCN5 [Source:UniProtKB/Swiss-Prot;Acc:Q9AR19]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.