CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59461	Soybean	mitochondrion	97.51	97.51
KRH16734	Soybean	endoplasmic reticulum	82.57	94.76
VIT_07s0031g01740.t01	Wine grape	mitochondrion	79.25	79.58
PGSC0003DMT400064476	Potato	extracellular, mitochondrion	73.03	72.73
GSMUA_Achr9P26890_001	Banana	cytosol	47.72	71.43
CDY46237	Canola	mitochondrion	68.05	68.33
CDY15861	Canola	mitochondrion	68.05	68.05
AT2G21870.1	Thale cress	mitochondrion	67.22	67.5
CDX76965	Canola	mitochondrion	67.22	67.5
EES06231	Sorghum	mitochondrion	66.81	67.08
GSMUA_Achr6P02850_001	Banana	mitochondrion	67.63	67.08
Bra031219.1-P	Field mustard	mitochondrion	67.22	66.94
CDY63375	Canola	mitochondrion	66.81	66.26
Os02t0131300-01	Rice	mitochondrion, plastid	65.98	66.25
Zm00001d007564_P001	Maize	plastid	41.91	65.58
Zm00001d015134_P001	Maize	mitochondrion	65.98	65.43
TraesCS6A01G092300.1	Wheat	golgi, mitochondrion	63.49	64.29
TraesCS6B01G120900.1	Wheat	mitochondrion	63.49	64.29
TraesCS6D01G081200.1	Wheat	golgi, mitochondrion	63.49	64.29
Zm00001d053983_P002	Maize	mitochondrion	63.9	54.61
HORVU0Hr1G018510.1	Barley	plasma membrane	63.9	48.73
Zm00001d041144_P001	Maize	cytosol	26.97	46.76

Protein Annotations

EMBL:ACUP02004851	EnsemblPlants:KRH43327	EnsemblPlantsGene:GLYMA_08G142800	EntrezGene:100787656	GO:GO:0007275	GO:GO:0008150
GO:GO:0009555	InterPro:MGP1	ncoils:Coil	PANTHER:PTHR36013	PFAM:PF15704	ProteinID:KRH43327
ProteinID:KRH43327.1	UniParc:UPI0002337F60	UniProt:I1KTB0	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:10861505..10864873

Molecular Weight (calculated)

27519.7 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.477

Length

241 amino acids

Sequence
(BLAST)

001: MALSSRLFSK SKLIYGCQIL LQKEHAIPVR HFAKESAPPA LKGDQMLKNI FVEVKNKFET AIGILKKEKI TIDPEDPAAV SHYAKVMKTV REKASLLSES
101: QDILSTIEIE TQDIPDARTY LLTLKEIRVK KGLTDDLGAE ALMIDALDKI EKDLKKPLLR NDKKGMDLLL AEFDKINKKI GIRKEDLPKY EEELELKVAK
201: AQLEELKKDA LEAMETQKKR EEFKDEPESV DVKTLDIRNF L

Best Arabidopsis Sequence Match ( AT2G21870.1 )
(BLAST)

001: MAYASRFLSR SKQLQGGLVI LQQQHAIPVR AFAKEAARPT FKGDEMLKGV FFDIKNKFQA AVDILRKEKI TLDPEDPAAV KQYANVMKTI RQKADMFSES
101: QRIKHDIDTE TQDIPDARAY LLKLQEIRTR RGLTDELGAE AMMFEALEKV EKDIKKPLLR SDKKGMDLLV AEFEKGNKKL GIRKEDLPKY EENLELSMAK
201: AQLDELKSDA VEAMESQKKK EEFQDEEMPD VKSLDIRNFI

Arabidopsis Description

MGP1Probable ATP synthase 24 kDa subunit, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.