CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02070	Soybean	extracellular	89.29	90.63
VIT_10s0116g01780.t01	Wine grape	extracellular	79.76	80.24
Solyc02g080530.2.1	Tomato	extracellular	77.68	80.06
PGSC0003DMT400042428	Potato	extracellular	77.38	79.75
KRH62311	Soybean	cytosol	37.8	69.78
Solyc02g032830.1.1	Tomato	cytosol	56.25	66.32
KRH32430	Soybean	extracellular	55.36	56.88
PGSC0003DMT400051161	Potato	extracellular	23.21	55.71
KRH19837	Soybean	extracellular	54.46	55.62
KRH51132	Soybean	extracellular	30.36	31.19
KRH02028	Soybean	extracellular	30.95	29.38

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	EntrezGene:547548	EMBL:ACUP02004727
EMBL:AF145348	EMBL:BT099283	EnsemblPlantsGene:GLYMA_07G260300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009505	GO:GO:0009506
GO:GO:0009664	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0020037	GO:GO:0030312
GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac
InterPro:IPR002016	EnsemblPlants:KRH51085	ProteinID:KRH51085	ProteinID:KRH51085.1	PFAM:PF00141	PRINTS:PR00458
PRINTS:PR00461	PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF69	MetaCyc:PWY-5461	MetaCyc:PWY-5466
MetaCyc:PWY-5469	MetaCyc:PWY-6824	MetaCyc:PWY-7214	MetaCyc:PWY-7445	InterPro:Peroxidase_pln	UniProt:Q9XFI6
SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI00000A129A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:43567648..43570017

Molecular Weight (calculated)

37472.0 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.350

Length

336 amino acids

Sequence
(BLAST)

001: MAPKGLTFLA VLICVSALSL SPSVAGEGQN NGLVMNFYKE SCPQAEDIIT EQVKLLYKRH KNTAFSWLRN IFHDCAVQSC DASLLLDSTR RSLSEKETDR
101: SFGLRNFRYI ETIKEALERE CPGVVSCADI LVLSARDGIV SLGGPHIPLK TGRRDGRRSR ADVVEQFLPD HNESISAVLD KFGAMGIDTP GVVALLGAHS
201: VGRTHCVKLV HRLYPEIDPA LNPDHVPHIL KKCPDAIPDP KAVQYVRNDR GTPMILDNNY YRNILDSKGL LIVDHQLAND KRTKPYVKKM AKSQDYFFKE
301: FSRAITLLSE NNPLTGTKGE VRKQCNVANK HHDQDP

Best Arabidopsis Sequence Match ( AT4G21960.1 )
(BLAST)

001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH

Arabidopsis Description

PER42Peroxidase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB81]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.