Factsheet for PGSC0003DMT400051161

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
plastid 2
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	extracellular
Plant-mPloc:	cytosol, nucleus, peroxisome, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21960.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042428	Potato	extracellular	65.71	28.22
AT4G21960.1	Thale cress	extracellular	59.29	25.15
VIT_10s0116g01780.t01	Wine grape	extracellular	58.57	24.55
Bra013576.1-P	Field mustard	extracellular	56.43	23.87
CDX79113	Canola	extracellular	56.43	23.87
CDX82887	Canola	extracellular	56.43	23.87
KRH51085	Soybean	endoplasmic reticulum	55.71	23.21
KRH02070	Soybean	extracellular	54.29	22.96
Solyc02g032830.1.1	Tomato	cytosol	45.71	22.46
PGSC0003DMT400027130	Potato	extracellular	43.57	18.54
PGSC0003DMT400004447	Potato	extracellular	42.86	18.52
PGSC0003DMT400061716	Potato	cytosol, extracellular, mitochondrion, plastid	15.0	8.94

Protein Annotations

Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005488	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0020037	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016
UniProt:M1BRD3	PFAM:PF00141	EnsemblPlantsGene:PGSC0003DMG400019870	PGSC:PGSC0003DMG400019870	EnsemblPlants:PGSC0003DMT400051161	PFscan:PS50873
PANTHER:PTHR31235	PANTHER:PTHR31235:SF69	SUPFAM:SSF48113	SignalP:SignalP-noTM	UniParc:UPI0002966F7A	:

Description

Peroxidase 63 [Source:PGSC_GENE;Acc:PGSC0003DMG400019870]

Coordinates

chr2:-:17092951..17094652

Molecular Weight (calculated)

15755.8 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.291

Length

140 amino acids

Sequence
(BLAST)

001: MTSKALFFGV LLFSALSAFA EEKEDDNPGL VMDYYKRTCP QAEENIKEQV NLLYKQQQNN AFSWLRNVFH DCFVELGGPY IPLKTGRRDG RRSRADILEQ
101: HLPSHNESIS VVLERFANIG INTPGAVALL GCKFYVGDGP

Best Arabidopsis Sequence Match ( AT4G21960.1 )
(BLAST)

001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH

Arabidopsis Description

PER42Peroxidase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB81]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.