Factsheet for PGSC0003DMT400042428

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21960.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080530.2.1	Tomato	extracellular	96.32	96.32
VIT_10s0116g01780.t01	Wine grape	extracellular	81.9	79.94
Bra013576.1-P	Field mustard	extracellular	80.67	79.46
CDX79113	Canola	extracellular	80.67	79.46
CDX82887	Canola	extracellular	80.67	79.46
KRH02070	Soybean	extracellular	80.37	79.15
AT4G21960.1	Thale cress	extracellular	78.83	77.88
KRH51085	Soybean	endoplasmic reticulum	79.75	77.38
PGSC0003DMT400051161	Potato	extracellular	28.22	65.71
PGSC0003DMT400004447	Potato	extracellular	54.6	54.94
PGSC0003DMT400027130	Potato	extracellular	55.21	54.71
PGSC0003DMT400061716	Potato	cytosol, extracellular, mitochondrion, plastid	23.93	33.19

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:102596217	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0020037	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase
InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	UniProt:M1BD07	PFAM:PF00141	EnsemblPlantsGene:PGSC0003DMG400016453	PGSC:PGSC0003DMG400016453
EnsemblPlants:PGSC0003DMT400042428	PRINTS:PR00458	PRINTS:PR00461	PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF69
InterPro:Peroxidase_pln	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI000295136D	RefSeq:XP_006348116.1

Description

Secretory peroxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400016453]

Coordinates

chr2:-:36328893..36330526

Molecular Weight (calculated)

37246.1 Da

IEP (calculated)

8.863

GRAVY (calculated)

-0.377

Length

326 amino acids

Sequence
(BLAST)

001: MASKHIFFFA ILFFSAVSVF AEENPSLVMD YYKDTCPQAE EIIKEQVKLL YKRHKNTAFS WLRNIFHDCF VESCDASLLL DSTRRMLSEK ETDRSFGMRN
101: FRYIETIKEA VERECPGVVS CADILVLSGR DGIVALGGPH IPLKTGRRDG RKSRADILEQ HLPDHNESMS VVLERFANIG INTPGVVALL GSHSVGRTHC
201: VKLVHRLYPE VDPQLNPEHV PHMLKKCPDP IPDPKAVQYV RNDRGTPMVL DNNYYRNILD NKGLMLVDHQ LAMDKRTKPY VKKMAKSQNY FFKEFARAIT
301: ILSENNPLTG TKGEIRKQCN LSNKLH

Best Arabidopsis Sequence Match ( AT4G21960.1 )
(BLAST)

001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH

Arabidopsis Description

PER42Peroxidase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB81]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.