Factsheet for VIT_10s0116g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21960.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080530.2.1	Tomato	extracellular	80.84	82.82
KRH02070	Soybean	extracellular	81.74	82.48
PGSC0003DMT400042428	Potato	extracellular	79.94	81.9
KRH51085	Soybean	endoplasmic reticulum	80.24	79.76
Bra013576.1-P	Field mustard	extracellular	77.25	77.95
CDX79113	Canola	extracellular	77.25	77.95
CDX82887	Canola	extracellular	77.25	77.95
AT4G21960.1	Thale cress	extracellular	76.95	77.88
Solyc02g032830.1.1	Tomato	cytosol	56.29	65.96
PGSC0003DMT400051161	Potato	extracellular	24.55	58.57
VIT_08s0040g02200.t01	Wine grape	extracellular	55.09	56.1
VIT_05s0077g00880.t01	Wine grape	extracellular	27.54	28.31

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:100241814	wikigene:100241814	MapMan:35.1
UniProt:A5AGY5	EMBL:AM426583	ProteinID:CAN60224	ProteinID:CAN60224.1	ProteinID:CCB48218	ProteinID:CCB48218.1
EMBL:FN595248	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009505	GO:GO:0009506	GO:GO:0009664	GO:GO:0009987
GO:GO:0016043	GO:GO:0016491	GO:GO:0020037	GO:GO:0030312	GO:GO:0042744	GO:GO:0046872
GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	EntrezGene:LOC100241814
wikigene:LOC100241814	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	PFscan:PS50873	PANTHER:PTHR31235
PANTHER:PTHR31235:SF69	InterPro:Peroxidase_pln	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	TIGR:TC51736
TIGR:TC52467	UniParc:UPI000151E993	ArrayExpress:VIT_10s0116g01780	EnsemblPlantsGene:VIT_10s0116g01780	EnsemblPlants:VIT_10s0116g01780.t01	unigene:Vvi.24930
RefSeq:XP_002274769	RefSeq:XP_002274769.1	SEG:seg	:	:	:

Description

Peroxidase [Source:UniProtKB/TrEMBL;Acc:A5AGY5]

Coordinates

chr10:+:1056785..1058642

Molecular Weight (calculated)

37795.3 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.370

Length

334 amino acids

Sequence
(BLAST)

001: MSSRAVVFFF FALLSFSGIC LRSASADNEE EDPGLVMNFY KDTCPQAEDV IREQVRLLYK RHKNTAFSWL RNIFHDCAVQ SCDASLLLDS TRRSLSEKET
101: DRSFGLRNFR YLDTIKEAVE RECPGVVSCA DILVLSARDG IVSLGGPHIS LKTGRRDGRK SRAEILEEYL PDHNESMSVV LDRFAAIGID TPGLVALLGA
201: HSVGRTHCVK LVHRLYPEVD PVLNTDHVEH MLHKCPDAIP DPKAVQYVRN DRGTPMKLDN NYYRNILDNK GLLIVDHQLA TDKRTKPYVK KMAKSQDYFF
301: KEFARAITIL SENNPLTGTK GEIRKQCSVA NKHH

Best Arabidopsis Sequence Match ( AT4G21960.1 )
(BLAST)

001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH

Arabidopsis Description

PER42Peroxidase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB81]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.