CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21960.1	CDY03088	AT2G01950.1	19000166
AT4G21960.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013576.1-P	Field mustard	extracellular	100.0	100.0
CDX82887	Canola	extracellular	100.0	100.0
AT4G21960.1	Thale cress	extracellular	91.84	92.12
Solyc02g080530.2.1	Tomato	extracellular	80.06	81.29
PGSC0003DMT400042428	Potato	extracellular	79.46	80.67
VIT_10s0116g01780.t01	Wine grape	extracellular	77.95	77.25
KRH62311	Soybean	cytosol	35.65	64.84
Solyc02g032830.1.1	Tomato	cytosol	54.68	63.51
PGSC0003DMT400051161	Potato	extracellular	23.87	56.43
CDY55434	Canola	extracellular	53.17	53.66
CDY46756	Canola	extracellular	52.87	53.03
CDX79717	Canola	extracellular	52.57	52.73
CDX92114	Canola	extracellular	26.59	26.04
CDX95885	Canola	extracellular	26.59	26.04

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	GO:A0A078CV99	EnsemblPlants:CDX79113
ProteinID:CDX79113	ProteinID:CDX79113.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0020037	GO:GO:0042744	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00131658001	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac
InterPro:IPR002016	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	PFscan:PS50873	PANTHER:PTHR31235
PANTHER:PTHR31235:SF69	MetaCyc:PWY-5461	MetaCyc:PWY-7214	MetaCyc:PWY-7445	InterPro:Peroxidase_pln	SUPFAM:SSF48113
InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI00018C70E5	:	:	:

Description

BnaA01g11800D

Coordinates

chrLK031816:-:1851443..1853450

Molecular Weight (calculated)

37518.4 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.414

Length

331 amino acids

Sequence
(BLAST)

001: MGGKGAMMVA MLCLWALSAT TEAVVMEEEP GLMMNFYKDT CPQAEDIIRE QVKLLYKRHK NTAFSWLRNI FHDCAVESCD ASLLLDSTRR ELGEKEHDRS
101: FGLRNFRYIE EIKEALEREC PGVVSCSDIL VLSAREGIEA VGGPHIPLKT GRRDGRKSRT DMLESYLPDH NESISVVLEK FKSIGIDTPG LVALLGSHSV
201: GRTHCVKLVH RLYPEVDPSL NPDHVPHMLH KCPDSIPDPK AVQYVRNDRG TPMVLDNNYY RNILDNKGLL LVDHQLAHDK RTRPIVKKMA KDQAYFFKEF
301: TRAIQILSEN NPLTGSKGEI RKQCNLANKI H

Best Arabidopsis Sequence Match ( AT4G21960.1 )
(BLAST)

001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH

Arabidopsis Description

PER42Peroxidase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB81]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.