Factsheet for Solyc02g032830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21960.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080530.2.1	Tomato	extracellular	70.88	61.96
KRH02070	Soybean	extracellular	67.37	58.01
VIT_10s0116g01780.t01	Wine grape	extracellular	65.96	56.29
KRH51085	Soybean	endoplasmic reticulum	66.32	56.25
Bra013576.1-P	Field mustard	extracellular	63.51	54.68
CDX79113	Canola	extracellular	63.51	54.68
CDX82887	Canola	extracellular	63.51	54.68
AT4G21960.1	Thale cress	extracellular	62.46	53.94
PGSC0003DMT400051161	Potato	extracellular	22.46	45.71
Solyc09g007520.2.1	Tomato	extracellular	45.96	40.43
Solyc10g084240.1.1	Tomato	extracellular	44.56	38.6

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009505
GO:GO:0009506	GO:GO:0009664	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0020037
GO:GO:0030312	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase
InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	UniProt:K4B5M7	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461
PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF69	InterPro:Peroxidase_pln	SUPFAM:SSF48113	EnsemblPlantsGene:Solyc02g032830.1
EnsemblPlants:Solyc02g032830.1.1	UniParc:UPI000276756B	:	:	:	:

Description

Peroxidase [Source:UniProtKB/TrEMBL;Acc:K4B5M7]

Coordinates

chr2:-:29380224..29381707

Molecular Weight (calculated)

32926.8 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.384

Length

285 amino acids

Sequence
(BLAST)

001: MLSLCIYTCP QSEDIIKEQV NQQQQNNAFS WLWNVFHDCF VESYNVSLLL ELTSGMLSEM ETDRSFGMRN FRYIDTIKEA VERESHDFVS CTDVIVLSGR
101: DGGPHIPLKT GRRHGRRSRA DILEQHLPSH NGSLVLCLRG AHSVFFPQCI KLVQRLYPEV DPQLNPEHVH HILKKCPNSK AVHYVRNDRG TPMKLDNNYY
201: RNILDNKGLM LVDQLAIDKR AKLYVKKMAK SQHYFFKEFS RAITVLSKNN PLTGTKGEIR KQLSCQQALG TCFSTTCILR FHFCM

Best Arabidopsis Sequence Match ( AT4G21960.1 )
(BLAST)

001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH

Arabidopsis Description

PER42Peroxidase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB81]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.