Factsheet for Solyc09g007520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 26583031
extracellular: 29876421

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37130.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004447	Potato	extracellular	96.3	96.3
VIT_08s0040g02200.t01	Wine grape	extracellular	73.77	72.87
Solyc10g084240.1.1	Tomato	extracellular	72.53	71.43
KRH32430	Soybean	extracellular	70.99	70.34
Bra023099.1-P	Field mustard	extracellular	70.99	69.7
CDY46756	Canola	extracellular	70.99	69.7
CDX79717	Canola	extracellular	70.68	69.39
Bra017206.1-P	Field mustard	extracellular	69.75	68.9
CDY55434	Canola	extracellular	69.44	68.6
KRH19837	Soybean	extracellular	69.44	68.39
AT2G37130.1	Thale cress	extracellular	68.83	68.2
GSMUA_Achr3P13770_001	Banana	extracellular	67.28	66.87
Os07t0694300-01	Rice	cytosol, extracellular	56.79	62.37
TraesCS2B01G098100.1	Wheat	extracellular	58.64	57.23
EES18091	Sorghum	extracellular	60.19	57.18
TraesCS2B01G098200.1	Wheat	extracellular	55.25	56.29
TraesCS2B01G098400.1	Wheat	extracellular	58.33	55.92
TraesCS2B01G098700.1	Wheat	extracellular	57.72	55.65
TraesCS2D01G082100.1	Wheat	extracellular	58.02	55.46
TraesCS2B01G098600.1	Wheat	extracellular	58.33	55.43
TraesCS2D01G081900.1	Wheat	extracellular	57.72	55.16
Solyc02g080530.2.1	Tomato	extracellular	54.94	54.6
HORVU2Hr1G013740.1	Barley	extracellular	20.99	52.31
TraesCS2A01G083900.1	Wheat	plastid	58.64	49.48
TraesCS2A01G084100.1	Wheat	plastid	58.64	49.48
Solyc02g032830.1.1	Tomato	cytosol	40.43	45.96

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009505
GO:GO:0009506	GO:GO:0009664	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0020037
GO:GO:0030312	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase
InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	UniProt:K4CQE1	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461
PFscan:PS50873	PANTHER:PTHR31235	PANTHER:PTHR31235:SF11	InterPro:Peroxidase_pln	SUPFAM:SSF48113	InterPro:Secretory_peroxidase
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc09g007520.2	EnsemblPlants:Solyc09g007520.2.1	UniParc:UPI000276B8ED	SEG:seg	:

Description

Peroxidase [Source:UniProtKB/TrEMBL;Acc:K4CQE1]

Coordinates

chr9:-:1092950..1099568

Molecular Weight (calculated)

36728.1 Da

IEP (calculated)

7.246

GRAVY (calculated)

-0.314

Length

324 amino acids

Sequence
(BLAST)

001: MANCSRFLLL LLPLLLHIHN VKSELQLNYY TKSCPRAEDI IKEQVATLYH KHGNTAVSWI RNLFHDCMVK SCDASLYLDT ANGLESEKES PRNFGMRNFK
101: YIETIKQALE KECPNTVSCA DIVALSARDG LLWLGGPIKI EMKTGRKDSK ETYFSEVEKY LPNHNDSISS VLSRFQSIGV DTEGTVALLG AHSVGRVHCV
201: NLVHRLYPTV DPTIDPDYAK YLKGRCPSPN PDPEAVLYSR FDRETTMILD NMYYKNILNK KGLLIVDQEL VSDPNTSPFV VKMANDNNYF HQQFARAMLI
301: LSENNPLIGD QGEIRKVCRY VNSA

Best Arabidopsis Sequence Match ( AT2G37130.1 )
(BLAST)

001: MANAKPFCLL GFFCLLLQLF SIFHIGNGEL EMNYYKESCP KAEEIIRQQV ETLYYKHGNT AVSWLRNLFH DCVVKSCDAS LLLETARGVE SEQKSKRSFG
101: MRNFKYVKII KDALEKECPS TVSCADIVAL SARDGIVMLK GPKIEMIKTG RRDSRGSYLG DVETLIPNHN DSLSSVISTF NSIGIDVEAT VALLGAHSVG
201: RVHCVNLVHR LYPTIDPTLD PSYALYLKKR CPSPTPDPNA VLYSRNDRET PMVVDNMYYK NIMAHKGLLV IDDELATDPR TAPFVAKMAA DNNYFHEQFS
301: RGVRLLSETN PLTGDQGEIR KDCRYVN

Arabidopsis Description

PER21Peroxidase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q42580]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.