CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
vacuole 2
endoplasmic reticulum 2
plastid 1
extracellular 1
plasma membrane 1
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68755	Soybean	cytosol	47.57	77.78
KRG94635	Soybean	cytosol	48.06	77.65
KRG96965	Soybean	cytosol	45.39	77.59
KRH68757	Soybean	cytosol, golgi, nucleus	63.11	75.14
KRH68760	Soybean	cytosol	54.61	75.0
VIT_14s0030g01960.t01	Wine grape	cytosol	58.5	71.09
KRG94634	Soybean	cytosol	10.92	68.18
KRH34080	Soybean	cytosol	56.07	68.14
KRH68728	Soybean	cytosol, nucleus	55.83	67.85
KRH35448	Soybean	nucleus	56.07	66.38
GSMUA_Achr9P10640_001	Banana	cytosol	55.34	65.33
KRH35444	Soybean	cytosol	53.88	64.53
KRG97174	Soybean	cytosol	19.42	64.0
KRH45230	Soybean	nucleus	47.57	57.31
KRH55515	Soybean	cytosol	46.84	56.27
KRH55516	Soybean	cytosol	45.39	54.36
KRH07938	Soybean	cytosol, extracellular, plastid	13.11	50.94
GSMUA_Achr8P20540_001	Banana	cytosol	26.21	47.37
KRH45977	Soybean	plastid	25.0	27.99
KRG99028	Soybean	plastid	25.0	27.99
KRH33472	Soybean	nucleus	20.87	26.22
KRG90245	Soybean	nucleus	20.63	25.91
KRH53587	Soybean	plastid	21.84	24.93
KRH42967	Soybean	extracellular	21.12	24.3
KRH59094	Soybean	extracellular, peroxisome, plastid	20.63	23.74
KRH69116	Soybean	plastid	23.3	22.8

Protein Annotations

EMBL:ACUP02002123	EnsemblPlants:KRH68759	EnsemblPlantsGene:GLYMA_03G248600	EntrezGene:100799703	Gene3D:3.20.20.100	InterPro:IPR036812
InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PANTHER:PTHR43625	PANTHER:PTHR43625:SF2	PFAM:PF00248	ProteinID:KRH68759
ProteinID:KRH68759.1	SEG:seg	SUPFAM:SSF51430	UniParc:UPI0002957B8B	UniProt:K7KGX2	MapMan:50.1.1

Description

hypothetical protein

Coordinates

chr3:-:44489308..44497930

Molecular Weight (calculated)

46366.7 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.215

Length

412 amino acids

Sequence
(BLAST)

001: MEWSLWSRDI EDEIIPLQSL ALELYYIVLL VEAFSVAKEF WKICLHIQPC YPAGERQGRV EMAEAESVQI PQVKLGTQGL VVSKLGLGCM TLSGRYNDPL
101: PEEEGISVIK HAFSQGITFF DTSDLYGLDH ANEFLLGKAL KQLPREKIQV ATKFGVAVAK FPNFQIKGTP EYVRSCCEAS LKRLDVEYID LYYQHRIDQT
201: VPIEETVGEL KKLVEEGKVK YIGLSEASPD TIRRAHAVHP ITALQIEWSL WTRDIEEEII PLCRELGIGI VPYSPLGRGF FGGKGVLENM PASTVLTLHH
301: PRFQAENINK NKRIYEQIES LAKKYQSTPP QLALAWVLHQ GNDVVPIPGT TKIKNLDQNI GALSLKFTES DLREISEAVP IHDVAGSQYF FGNDKDSWKF
401: ANTPPKDPRV ST

Best Arabidopsis Sequence Match ( AT1G60680.1 )
(BLAST)

001: MAEACRVRRM KLGSQGLEVS AQGLGCMALS ARYGAPKPET DAIALLHHAI NSGVTFFDTS DMYGPETNEL LLGKALKDGV KEKVELATKF GFFIVEGEIS
101: EVRGDPEYVR AACEASLKRL DIACIDLYYQ HRIDTRVPIE ITMRELKKLV EEGKIKYIGL SEASASTIRR AHAVHPITAV QIEWSLWSRD AEEDIIPICR
201: ELGIGIVAYS PLGRGFLAAG PKLAENLEND DFRKTLPRFQ QENVDHNKIL FEKVSAMAEK KGCTPAQLAL AWVHHQGDDV CPIPGTTKIE NLNQNIRALS
301: VKLTPEEISE LDSLAKPESV KGERYMASMS TFKNSNTPPL SSWKAT

Arabidopsis Description

AGD2Probable aldo-keto reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84M96]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.