CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
vacuole 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55515	Soybean	cytosol	90.94	90.67
KRH55516	Soybean	cytosol	88.6	88.08
VIT_05s0062g00950.t01	Wine grape	cytosol	47.66	81.5
TraesCS2A01G274800.1	Wheat	cytosol	80.99	79.83
TraesCS2D01G273600.1	Wheat	cytosol, mitochondrion, plastid	42.4	79.67
GSMUA_Achr5P16010_001	Banana	cytosol	27.19	79.49
Zm00001d031666_P002	Maize	extracellular	80.41	79.48
Os04t0338000-01	Rice	plasma membrane	81.29	79.2
TraesCS2D01G273400.1	Wheat	cytosol	80.12	78.96
Bra027140.1-P	Field mustard	cytosol, nucleus, peroxisome	76.9	78.74
TraesCS2A01G274700.1	Wheat	cytosol, mitochondrion, peroxisome	79.53	78.61
AT1G60710.1	Thale cress	cytosol	78.36	77.68
TraesCS5D01G522300.1	Wheat	cytosol	78.95	77.14
TraesCS2A01G326100.1	Wheat	mitochondrion	77.78	76.66
TraesCS2D01G336700.1	Wheat	cytosol	77.78	76.66
TraesCS5D01G336900.1	Wheat	golgi, plastid	78.36	76.57
AT1G60690.1	Thale cress	cytosol	77.19	76.52
TraesCS2B01G356000.1	Wheat	cytosol	45.61	76.47
AT1G60750.1	Thale cress	cytosol	73.68	76.36
GSMUA_Achr5P16000_001	Banana	cytosol, nucleus, plastid	33.63	76.16
TraesCS4A01G349500.1	Wheat	cytosol	44.44	76.0
AT1G60680.1	Thale cress	cytosol, mitochondrion	76.61	75.72
Os04t0337500-01	Rice	plasma membrane	77.19	75.43
TraesCS2D01G336900.1	Wheat	cytosol, mitochondrion	75.15	74.71
CDY70614	Canola	cytosol	73.1	74.18
Os04t0339400-01	Rice	plasma membrane	76.9	74.08
Bra031486.1-P	Field mustard	cytosol	72.51	73.81
TraesCS2A01G325800.2	Wheat	cytosol, mitochondrion	76.61	73.8
AT1G60730.3	Thale cress	cytosol	77.49	72.6
Bra031485.1-P	Field mustard	cytosol, mitochondrion	76.02	72.22
Bra027138.1-P	Field mustard	cytosol	52.92	71.83
TraesCS2D01G336800.1	Wheat	cytosol, mitochondrion	75.44	71.27
Bra027142.1-P	Field mustard	cytosol	76.32	71.12
Bra027135.1-P	Field mustard	cytosol, mitochondrion, nucleus	52.92	70.98
AT1G10810.1	Thale cress	mitochondrion, peroxisome, plastid	71.34	70.93
GSMUA_Achr5P16020_001	Banana	cytosol	81.58	70.63
TraesCS6D01G127900.1	Wheat	mitochondrion	74.27	70.56
Bra027134.1-P	Field mustard	cytosol	70.18	70.38
KRG94634	Soybean	cytosol	13.45	69.7
CDY34139	Canola	cytosol	51.46	69.57
Os04t0337800-00	Rice	mitochondrion	52.34	69.38
OQU82702	Sorghum	mitochondrion	23.39	68.97
Zm00001d036024_P001	Maize	extracellular, mitochondrion	79.53	68.69
Bra027139.1-P	Field mustard	cytosol	50.58	68.38
Zm00001d006365_P001	Maize	mitochondrion	79.53	66.83
CDY34675	Canola	cytosol	40.06	64.93
HORVU2Hr1G082700.1	Barley	extracellular	50.29	64.66
KRG97174	Soybean	cytosol	22.51	61.6
TraesCS5A01G331200.1	Wheat	cytosol	40.64	60.17
KRG94635	Soybean	cytosol	43.86	58.82
KRG96965	Soybean	cytosol	41.23	58.51
KRH68755	Soybean	cytosol	42.4	57.54
KRH68728	Soybean	cytosol, nucleus	56.14	56.64
KRH68757	Soybean	cytosol, golgi, nucleus	57.02	56.36
KRH34080	Soybean	cytosol	55.85	56.34
KRH35448	Soybean	nucleus	56.43	55.46
KRH68760	Soybean	cytosol	47.08	53.67
KRH35444	Soybean	cytosol	53.51	53.2
KRH68759	Soybean	nucleus	57.31	47.57
Solyc09g097950.1.1	Tomato	cytosol	19.88	45.64
PGSC0003DMT400042838	Potato	cytosol	58.19	44.32
KRH07938	Soybean	cytosol, extracellular, plastid	12.87	41.51
KRH45977	Soybean	plastid	32.16	29.89
KRG99028	Soybean	plastid	32.16	29.89
KRG90245	Soybean	nucleus	25.15	26.22
KRH33472	Soybean	nucleus	25.15	26.22
KRH53587	Soybean	plastid	26.02	24.65
KRH42967	Soybean	extracellular	24.56	23.46
KRH69116	Soybean	plastid	28.66	23.28
KRH59094	Soybean	extracellular, peroxisome, plastid	24.27	23.18

Protein Annotations

EMBL:ACUP02005011	EnsemblPlants:KRH45230	EnsemblPlantsGene:GLYMA_08G259500	EntrezGene:100807798	Gene3D:3.20.20.100	InterPro:IPR036812
InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PANTHER:PTHR43625	PANTHER:PTHR43625:SF18	PFAM:PF00248	ProteinID:KRH45229.1
ProteinID:KRH45230	ProteinID:KRH45230.1	SUPFAM:SSF51430	UniParc:UPI0002338286	UniProt:I1KWT3	MapMan:50.1.1

Description

hypothetical protein

Coordinates

chr8:-:23424151..23430725

Molecular Weight (calculated)

37490.1 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.246

Length

342 amino acids

Sequence
(BLAST)

001: MARVGRMKLG SQGMEVSLQG LGCMGMSAFY GPPKPDPDMI ALIHHAVQTG VTFLDTSDVY GPHTNELLLG KALKGGVRDE VELATKFGIN VAEGKREIRG
101: DPAYVRAACE GSLKRLGIDC IDLYYQHRID TRVPIEITIG ELKKLVEEGK IKYIGLSEAS ASTIRRAHAV HPITAVQLEW SLWSRDVEEE IVPTCRELGI
201: GIVAYSPLGR GFLSSGPKLL ENLTQDDFRQ SLPRFQPENL EQNKTIFERV NELAAKKGCT PSQLALAWVH HQGKDVCPIP GTTKIENFNQ NIGALSVKLT
301: PEDMAELESF AAADAVKGGR YMDGFATWKE SDTPPLSSWK AA

Best Arabidopsis Sequence Match ( AT1G60710.1 )
(BLAST)

001: MAEACGVRRM KLGSQGLEVS AQGLGCMGLS AFYGAPKPEN EAIALIHHAI HSGVTLLDTS DIYGPETNEV LLGKALKDGV REKVELATKF GISYAEGKRE
101: VRGDPEYVRA ACEASLKRLD IACIDLYYQH RVDTRVPIEI TMGELKKLVE EGKIKYIGLS EASASTIRRA HAVHPITAVQ IEWSLWTRDV EEEIIPTCRE
201: LGIGIVAYSP LGRGFFASGP KLVENLEKDD FRKALPRFQE ENLDHNKIVY EKVCAISEKK GCTPGQLALA WVHHQGDDVC PIPGTTKIEN LKQNIGALSV
301: KLTPEEMTEL EAIAQPGFVK GDRYSNMIPT FKNAETPPLS AWKAA

Arabidopsis Description

ATB2Probable aldo-keto reductase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.