CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35444	Soybean	cytosol	80.75	81.69
VIT_05s0020g04130.t01	Wine grape	cytosol	75.0	75.65
PGSC0003DMT400016488	Potato	mitochondrion	49.71	71.78
KRG94635	Soybean	cytosol	52.01	70.98
KRG96965	Soybean	cytosol	49.14	70.95
KRG94634	Soybean	cytosol	13.22	69.7
Solyc09g082720.2.1	Tomato	cytosol, plastid	68.97	69.57
Solyc09g082730.2.1	Tomato	cytosol	68.39	68.79
PGSC0003DMT400016484	Potato	cytosol	68.68	68.68
KRH68755	Soybean	cytosol	47.41	65.48
KRH68728	Soybean	cytosol, nucleus	63.22	64.9
KRG97174	Soybean	cytosol	23.28	64.8
KRH68757	Soybean	cytosol, golgi, nucleus	64.37	64.74
KRH34080	Soybean	cytosol	62.36	64.01
KRH68760	Soybean	cytosol	55.17	64.0
GSMUA_Achr8P26850_001	Banana	mitochondrion	63.22	62.86
KRH45230	Soybean	nucleus	55.46	56.43
KRH68759	Soybean	nucleus	66.38	56.07
KRH55515	Soybean	cytosol	55.17	55.98
KRH55516	Soybean	cytosol	54.89	55.52
KRH07938	Soybean	cytosol, extracellular, plastid	14.08	46.23
KRH45977	Soybean	plastid	28.45	26.9
KRG99028	Soybean	plastid	28.16	26.63
KRH33472	Soybean	nucleus	24.43	25.91
KRG90245	Soybean	nucleus	24.14	25.61
KRH53587	Soybean	plastid	26.15	25.21
KRH42967	Soybean	extracellular	22.99	22.35
KRH59094	Soybean	extracellular, peroxisome, plastid	22.7	22.07
KRH69116	Soybean	plastid	25.86	21.38

Protein Annotations

EMBL:ACUP02006676	EnsemblPlants:KRH35448	EnsemblPlantsGene:GLYMA_10G243700	EntrezGene:100811411	Gene3D:3.20.20.100	InterPro:IPR036812
InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PANTHER:PTHR43625	PANTHER:PTHR43625:SF10	PFAM:PF00248	ProteinID:KRH35448
ProteinID:KRH35448.1	SUPFAM:SSF51430	UniParc:UPI000233C94F	UniProt:I1LE01	MapMan:50.1.1	:

Description

hypothetical protein

Coordinates

chr10:+:47213119..47217062

Molecular Weight (calculated)

38713.5 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.281

Length

348 amino acids

Sequence
(BLAST)

001: MEKAHMQVPR VKLGNQGLEV SRLGFGCGGL SGIYNAPLSH EEGCSIIKEV FNKGVTFFDT SDLYGQNHDN EIMVGKALKQ LPREKVQLAT KFGVTVSGPD
101: GLDFGVKGTP EYVRQCCEAS LKRLDVDHID LYYQHRVDTS VPIEDTMGEL KQLVNEGKIK YIGLSEANAD TIRRAHAVHP ITALQMEYSL WTRDIEEEII
201: PLCRQLGIGI VAYSPLGRGF FAGKAVVETL PSQSLLSMHP RFTGENLEKN KLFYKRLDDL ASKHACTPSQ LALAWLLHQG NDIIPIPGTT KLKNFENNIG
301: SLTVKLTEED LRELSEAVPV YEVAGTREYG MLSNYTWKFA TTPPKQLS

Best Arabidopsis Sequence Match ( AT1G60680.1 )
(BLAST)

001: MAEACRVRRM KLGSQGLEVS AQGLGCMALS ARYGAPKPET DAIALLHHAI NSGVTFFDTS DMYGPETNEL LLGKALKDGV KEKVELATKF GFFIVEGEIS
101: EVRGDPEYVR AACEASLKRL DIACIDLYYQ HRIDTRVPIE ITMRELKKLV EEGKIKYIGL SEASASTIRR AHAVHPITAV QIEWSLWSRD AEEDIIPICR
201: ELGIGIVAYS PLGRGFLAAG PKLAENLEND DFRKTLPRFQ QENVDHNKIL FEKVSAMAEK KGCTPAQLAL AWVHHQGDDV CPIPGTTKIE NLNQNIRALS
301: VKLTPEEISE LDSLAKPESV KGERYMASMS TFKNSNTPPL SSWKAT

Arabidopsis Description

AGD2Probable aldo-keto reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84M96]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.