CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94634	Soybean	cytosol	16.22	83.33
KRG97174	Soybean	cytosol	29.2	79.2
KRH34080	Soybean	cytosol	75.81	75.81
KRG96965	Soybean	cytosol	50.74	71.37
VIT_14s0030g02050.t01	Wine grape	cytosol	71.09	70.26
VIT_14s0030g01980.t01	Wine grape	cytosol	70.5	69.88
KRG94635	Soybean	cytosol	52.51	69.8
VIT_14s0030g02020.t01	Wine grape	cytosol	71.09	69.45
Solyc01g097380.1.1	Tomato	plastid	67.85	69.07
Solyc01g097390.2.1	Tomato	plastid	69.62	68.6
VIT_14s0030g01970.t01	Wine grape	cytosol	69.91	68.3
KRH68757	Soybean	cytosol, golgi, nucleus	67.55	66.19
KRH68755	Soybean	cytosol	48.97	65.87
VIT_14s0030g02060.t01	Wine grape	peroxisome	67.85	65.53
VIT_14s0030g01990.t01	Wine grape	cytosol	67.85	65.53
KRH68760	Soybean	cytosol	57.82	65.33
KRH35444	Soybean	cytosol	65.49	64.53
KRH07938	Soybean	cytosol, extracellular, plastid	20.06	64.15
KRH35448	Soybean	nucleus	64.9	63.22
VIT_14s0030g02010.t01	Wine grape	extracellular, mitochondrion	19.17	58.56
KRH45230	Soybean	nucleus	56.64	56.14
KRH68759	Soybean	nucleus	67.85	55.83
KRH55515	Soybean	cytosol	55.75	55.1
KRH55516	Soybean	cytosol	54.87	54.07
KRH45977	Soybean	plastid	29.2	26.9
KRG99028	Soybean	plastid	29.2	26.9
KRH33472	Soybean	nucleus	24.48	25.3
KRG90245	Soybean	nucleus	24.19	25.0
KRH53587	Soybean	plastid	26.55	24.93
KRH42967	Soybean	extracellular	25.07	23.74
KRH59094	Soybean	extracellular, peroxisome, plastid	24.19	22.91
KRH69116	Soybean	plastid	25.37	20.43

Protein Annotations

EMBL:ACUP02002123	EnsemblPlants:KRH68728	EnsemblPlantsGene:GLYMA_03G246700	EntrezGene:102670317	Gene3D:3.20.20.100	InterPro:IPR036812
InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PANTHER:PTHR43625	PANTHER:PTHR43625:SF2	PFAM:PF00248	ProteinID:KRH68728
ProteinID:KRH68728.1	SUPFAM:SSF51430	UniParc:UPI00023C1187	UniProt:I1JRM5	MapMan:50.1.1	:

Description

hypothetical protein

Coordinates

chr3:-:44357941..44361456

Molecular Weight (calculated)

37419.9 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.151

Length

339 amino acids

Sequence
(BLAST)

001: MADIPRVKLG SQGLEVSKLG FGCMGLSGVY NDPVPEEVGI SLIKHAFTKG VTFFDSADFY GARANEVLVG KALRDFPRDQ FQIATKFGIV KMENGNVIVN
101: GSPEYVRSCC EGSLQRLGVS YIDLYYQHRV DTTVPIEDTM GELKRLVQEG KIRYIGLSEA SPDTIRRAHA VHPITAVQLE WSLWTREIEQ DIVPLCRELG
201: IGIVPYSPLG RGFFGGKAVV ESIPANSFLA FQPRLRGENF DKNKILYSRI EKLAEKYGCT SSQLALAWIL HQGDDVVPIP GTTKIKNLDS NIGSCEVKLS
301: KDDLKEITDA VPISEVAGDR TTDAFVRCSW KFANTPPKA

Best Arabidopsis Sequence Match ( AT1G60710.1 )
(BLAST)

001: MAEACGVRRM KLGSQGLEVS AQGLGCMGLS AFYGAPKPEN EAIALIHHAI HSGVTLLDTS DIYGPETNEV LLGKALKDGV REKVELATKF GISYAEGKRE
101: VRGDPEYVRA ACEASLKRLD IACIDLYYQH RVDTRVPIEI TMGELKKLVE EGKIKYIGLS EASASTIRRA HAVHPITAVQ IEWSLWTRDV EEEIIPTCRE
201: LGIGIVAYSP LGRGFFASGP KLVENLEKDD FRKALPRFQE ENLDHNKIVY EKVCAISEKK GCTPGQLALA WVHHQGDDVC PIPGTTKIEN LKQNIGALSV
301: KLTPEEMTEL EAIAQPGFVK GDRYSNMIPT FKNAETPPLS AWKAA

Arabidopsis Description

ATB2Probable aldo-keto reductase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.