CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011274_P001	Maize	mitochondrion	83.08	80.6
Os01t0595201-00	Rice	cytosol	62.31	61.83
TraesCS3B01G244200.1	Wheat	mitochondrion	60.77	61.24
TraesCS3D01G216100.1	Wheat	cytosol	61.54	52.98
EES01377	Sorghum	cytosol	48.46	42.57
KXG22404	Sorghum	extracellular	42.31	37.16
EES17440	Sorghum	cytosol, plastid	22.31	33.33
EES06905	Sorghum	cytosol	21.54	24.78
KXG25122	Sorghum	mitochondrion	33.85	20.85
EER90630	Sorghum	plastid	32.31	19.72
EES02979	Sorghum	mitochondrion, nucleus	32.31	12.84

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.2	EntrezGene:8082186	UniProt:A0A1W0VYA1	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	EnsemblPlants:OQU87104	ProteinID:OQU87104	ProteinID:OQU87104.1	PFAM:PF00403	PFscan:PS50846
PANTHER:PTHR22814	PANTHER:PTHR22814:SF102	EnsemblPlantsGene:SORBI_3003G206700	SUPFAM:SSF55008	UniParc:UPI0001A8498E	RefSeq:XP_002455884.1

Description

hypothetical protein

Coordinates

chr3:+:53728646..53730646

Molecular Weight (calculated)

14309.3 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.304

Length

130 amino acids

Sequence
(BLAST)

001: MAARGFERFS RWFQRSSAAA GGSKDEDDRS ERNGLLRSQL DQVVPVTDCA DTSKALAVHM EPKTVALKVS MHCHGCARKV QKQISKLQGV VSFRVELESK
101: RLTVVGNVSP TEVLECVCKV TKHAEILQAP

Best Arabidopsis Sequence Match ( AT3G24450.1 )
(BLAST)

001: MGKLQKIGRV WDCLFLPTNQ CSCFCLNTLG DEEEEFEKEP LIDSSTEKSG KVMRLKDVVA ADHRQTLAFH LKPKIVELKV SMHCYGCAKK VEKHISKLDG
101: VTWYKVELES KKVVVKGNIL PVDVLESICK VKNAQLWSSP

Arabidopsis Description

Heavy metal transport/detoxification superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.