CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 3
nucleus 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06348
EES11247
KXG20553
KXG26864

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66240.1	EES11247	AT1G63440.1	16367966
AT1G66240.1	KXG26864	AT1G63440.1	16367966
AT1G66240.1	EES06348	AT5G44790.1	17223078
AT1G66240.1	KXG20553	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031132_P002	Maize	cytosol	87.36	90.48
TraesCS7D01G342900.1	Wheat	cytosol	74.71	84.42
TraesCS7B01G247000.1	Wheat	cytosol	74.71	84.42
Os08t0205400-01	Rice	extracellular, plasma membrane	77.01	82.72
Bra029854.1-P	Field mustard	cytosol, plastid	71.26	81.58
CDY00957	Canola	cytosol, plastid	71.26	81.58
CDY08589	Canola	cytosol, plastid	71.26	81.58
VIT_13s0074g00770.t01	Wine grape	cytosol	77.01	77.91
Solyc05g055310.2.1	Tomato	plastid	72.41	77.78
PGSC0003DMT400060399	Potato	cytosol, plastid	72.41	77.78
PGSC0003DMT400050141	Potato	cytosol, plastid	77.01	63.21
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	79.31	61.61
AT1G66240.1	Thale cress	cytosol, plastid	72.41	59.43
Solyc11g007200.1.1	Tomato	extracellular	74.71	57.52
EES06905	Sorghum	cytosol	65.52	50.44
TraesCS7A01G335400.1	Wheat	cytosol	73.56	38.32
KXG22404	Sorghum	extracellular	39.08	22.97
OQU87104	Sorghum	cytosol, mitochondrion	33.33	22.31
EES01377	Sorghum	cytosol	37.93	22.3
EER90630	Sorghum	plastid	43.68	17.84
KXG25122	Sorghum	mitochondrion	40.23	16.59
EES02979	Sorghum	mitochondrion, nucleus	43.68	11.62

Protein Annotations

MapMan:25.5.2.3	Gene3D:3.30.70.100	EntrezGene:8071498	UniProt:C5YSH7	EnsemblPlants:EES17440	ProteinID:EES17440
ProteinID:EES17440.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001
GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF172	EnsemblPlantsGene:SORBI_3008G179500	SUPFAM:SSF55008
unigene:Sbi.18103	UniParc:UPI0001A882AB	RefSeq:XP_002443602.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:61298922..61302518

Molecular Weight (calculated)

9071.9 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.040

Length

87 amino acids

Sequence
(BLAST)

1: MAAQTVVLKV GMSCQGCVGA VKRVLGKMEG VESFDVDIKE QKVTVKGNVT PDAVLQTVSK TGKKTEFWEA EPVTTESAAA PADATTA

Best Arabidopsis Sequence Match ( AT1G66240.1 )
(BLAST)

001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA

Arabidopsis Description

ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.