Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES17440 | Sorghum | cytosol, plastid | 90.48 | 87.36 |
| TraesCS7D01G342900.1 | Wheat | cytosol | 76.19 | 83.12 |
| TraesCS7B01G247000.1 | Wheat | cytosol | 76.19 | 83.12 |
| Bra029854.1-P | Field mustard | cytosol, plastid | 73.81 | 81.58 |
| CDY08589 | Canola | cytosol, plastid | 73.81 | 81.58 |
| CDY00957 | Canola | cytosol, plastid | 73.81 | 81.58 |
| Os08t0205400-01 | Rice | extracellular, plasma membrane | 78.57 | 81.48 |
| VIT_13s0074g00770.t01 | Wine grape | cytosol | 80.95 | 79.07 |
| PGSC0003DMT400060399 | Potato | cytosol, plastid | 75.0 | 77.78 |
| Solyc05g055310.2.1 | Tomato | plastid | 75.0 | 77.78 |
| GSMUA_Achr6P07500_001 | Banana | cytosol, plastid | 80.95 | 60.71 |
| PGSC0003DMT400050141 | Potato | cytosol, plastid | 76.19 | 60.38 |
| AT1G66240.1 | Thale cress | cytosol, plastid | 73.81 | 58.49 |
| Solyc11g007200.1.1 | Tomato | extracellular | 73.81 | 54.87 |
| Zm00001d016691_P001 | Maize | extracellular | 69.05 | 51.79 |
| TraesCS7A01G335400.1 | Wheat | cytosol | 73.81 | 37.13 |
| Zm00001d011731_P001 | Maize | extracellular | 38.1 | 21.62 |
| Zm00001d043615_P001 | Maize | cytosol | 38.1 | 20.38 |
| Zm00001d011274_P001 | Maize | mitochondrion | 30.95 | 19.4 |
| Zm00001d034634_P001 | Maize | plastid | 44.05 | 17.62 |
| Zm00001d012973_P001 | Maize | plastid | 44.05 | 17.54 |
| Zm00001d040839_P001 | Maize | nucleus | 46.43 | 11.68 |
| Zm00001d050277_P001 | Maize | mitochondrion | 22.62 | 10.0 |
| Zm00001d038419_P001 | Maize | cytosol | 23.81 | 8.81 |
Protein Annotations
| EntrezGene:100282864 | MapMan:25.5.2.3 | Gene3D:3.30.70.100 | UniProt:B6SPL7 | EMBL:BT085163 | EMBL:EU954682 |
| EMBL:EU955992 | EMBL:EU962575 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | ProteinID:ONM02234.1 |
| PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF172 | SUPFAM:SSF55008 | UniParc:UPI000160BCDB |
| EnsemblPlantsGene:Zm00001d031132 | EnsemblPlants:Zm00001d031132_P002 | EnsemblPlants:Zm00001d031132_T002 | : | : | : |
Description
Copper transport protein ATX1
Coordinates
chr1:-:178992773..178997888
Molecular Weight (calculated)
8738.5 Da
IEP (calculated)
5.019
GRAVY (calculated)
0.023
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MAQTVVLKVG MSCEGCVGAV KRVLGKMEGV ESYDVDIMEQ KVTVKGNVTP DAVLQTVSKT GKKTSFWEAE AVTSESATPA GATA
001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA
101: GETAKA
Arabidopsis Description
ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.