Factsheet for Zm00001d040839_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02979	Sorghum	mitochondrion, nucleus	77.84	79.51
Os01t0976300-01	Rice	mitochondrion, plastid	37.13	60.78
TraesCS3A01G526400.1	Wheat	cytosol, mitochondrion, plastid	48.5	53.29
TraesCS3D01G531500.1	Wheat	mitochondrion, plastid	48.2	53.14
TraesCS3B01G593700.1	Wheat	plastid	47.9	52.12
Zm00001d034634_P001	Maize	plastid	31.74	50.48
Zm00001d012973_P001	Maize	plastid	30.84	48.82
Zm00001d031132_P002	Maize	cytosol	11.68	46.43
HORVU3Hr1G114920.1	Barley	cytosol	47.9	44.57
Zm00001d043615_P001	Maize	cytosol	16.47	35.03
Zm00001d011731_P001	Maize	extracellular	15.27	34.46
Zm00001d016691_P001	Maize	extracellular	10.78	32.14
Zm00001d038419_P001	Maize	cytosol	20.36	29.96
Zm00001d011274_P001	Maize	mitochondrion	11.68	29.1
Zm00001d050277_P001	Maize	mitochondrion	14.67	25.79

Protein Annotations

EntrezGene:103650190	Gene3D:3.30.70.100	MapMan:35.1	UniProt:A0A1D6MTC1	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	ProteinID:ONM32138.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF130
SUPFAM:SSF55008	UniParc:UPI000221A132	EnsemblPlantsGene:Zm00001d040839	EnsemblPlants:Zm00001d040839_P001	EnsemblPlants:Zm00001d040839_T001	SEG:seg

Description

Heavy metal transport/detoxification superfamily protein

Coordinates

chr3:+:69848831..69850299

Molecular Weight (calculated)

35518.7 Da

IEP (calculated)

10.664

GRAVY (calculated)

-0.550

Length

334 amino acids

Sequence
(BLAST)

001: MASLLRWKDK YVKERLQGLS CSSAAATSVV PSNGRAIDRH SPHLRDPHRR LPPPVPKPPR PSSSFSTTKD SSSSSYKQRQ QICHFDVDGK DKRKNKKKKS
101: TAAAAAGSGS SPSEHRRNGK EKALQLQQVS PASSSRFLLN SSRLMMQSDD ETTAVDSLPP LPSPRRPSFV DAAAEDDTDT FPSSHGDAAS PAVPSRRPQL
201: VAPAPPLELF AEPSASGAGS SSSSSSEITG GHVVAAADNT VVVRSCSTRT GQHQVVVLRV SLHCKGCAGK VKKHLSKMEG VTSFDIDIAT KKVTVVGDVT
301: PLGVLNSISK VKSAQFWPDS RSSFSTPPRA SASF

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.