Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G526400.1 | Wheat | cytosol, mitochondrion, plastid | 74.65 | 88.16 |
| TraesCS3D01G531500.1 | Wheat | mitochondrion, plastid | 73.82 | 87.46 |
| TraesCS3B01G593700.1 | Wheat | plastid | 73.54 | 85.99 |
| Os01t0976300-01 | Rice | mitochondrion, plastid | 35.65 | 62.75 |
| Zm00001d040839_P001 | Maize | nucleus | 44.57 | 47.9 |
| EES02979 | Sorghum | mitochondrion, nucleus | 42.62 | 46.79 |
| HORVU5Hr1G112560.1 | Barley | plastid | 26.74 | 46.38 |
| HORVU1Hr1G080800.1 | Barley | mitochondrion | 16.43 | 38.82 |
| HORVU3Hr1G068200.1 | Barley | cytosol | 15.04 | 37.76 |
| HORVU7Hr1G100230.1 | Barley | cytosol | 10.03 | 32.14 |
| HORVU1Hr1G072500.1 | Barley | mitochondrion | 16.71 | 31.25 |
| HORVU7Hr1G082540.3 | Barley | cytosol, plastid | 6.69 | 29.63 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.1 | UniProt:A0A287MSH3 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | EnsemblPlantsGene:HORVU3Hr1G114920 |
| EnsemblPlants:HORVU3Hr1G114920.1 | InterPro:IPR006121 | PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF130 |
| SUPFAM:SSF55008 | UniParc:UPI000B48081D | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:691998387..691999778
Molecular Weight (calculated)
37642.6 Da
IEP (calculated)
10.978
GRAVY (calculated)
-0.399
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: WSTSFGFGVG PSLPSKGASL KAGTHIQIQY KPKKKRTIIH FIVHHQPNPK THSNSMASLL LKGVHKRLGL PSISISCSSA DATNIIASTG SVAGVGSSSG
101: RAIDRHSPRL RDPHRTSTST SKPPRPSTST KDSPSSDSSK TKRQHGHGNK KKKSTTAAAG TSEKRLVSPA TSSRFLLNSS RLQSDDLDVL ALPPPPPPSF
201: IDVFPGGEGK PASFIDAFPR DASLALSFAK EAQSPAQQAQ SSSSSSSASS SSEITAVKEE EQQEKAAVLA RSSSTTAART TQVVVVLRVS LHCKGCAGKV
301: KKHIAKMEGV TSIDIDIASK KVTVVGDVTP LGVLTSVSKV KPAQFWPSQP CPPRASASF
101: RAIDRHSPRL RDPHRTSTST SKPPRPSTST KDSPSSDSSK TKRQHGHGNK KKKSTTAAAG TSEKRLVSPA TSSRFLLNSS RLQSDDLDVL ALPPPPPPSF
201: IDVFPGGEGK PASFIDAFPR DASLALSFAK EAQSPAQQAQ SSSSSSSASS SSEITAVKEE EQQEKAAVLA RSSSTTAART TQVVVVLRVS LHCKGCAGKV
301: KKHIAKMEGV TSIDIDIASK KVTVVGDVTP LGVLTSVSKV KPAQFWPSQP CPPRASASF
001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK
Arabidopsis Description
NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.