CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
vacuole 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040839_P001	Maize	nucleus	79.51	77.84
Os01t0976300-01	Rice	mitochondrion, plastid	37.31	59.8
EER90630	Sorghum	plastid	32.72	50.23
TraesCS3D01G531500.1	Wheat	mitochondrion, plastid	46.48	50.16
TraesCS3A01G526400.1	Wheat	cytosol, mitochondrion, plastid	45.87	49.34
TraesCS3B01G593700.1	Wheat	plastid	45.87	48.86
EES17440	Sorghum	cytosol, plastid	11.62	43.68
HORVU3Hr1G114920.1	Barley	cytosol	46.79	42.62
KXG22404	Sorghum	extracellular	17.74	39.19
EES01377	Sorghum	cytosol	17.13	37.84
OQU87104	Sorghum	cytosol, mitochondrion	12.84	32.31
KXG25122	Sorghum	mitochondrion	19.57	30.33
EES06905	Sorghum	cytosol	10.09	29.2

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:8074915	UniProt:C5XKP6	EnsemblPlants:EES02979	ProteinID:EES02979
ProteinID:EES02979.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001
GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF130	EnsemblPlantsGene:SORBI_3003G167500	SUPFAM:SSF55008
unigene:Sbi.11058	UniParc:UPI0001A84B01	RefSeq:XP_002457859.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:27265060..27271626

Molecular Weight (calculated)

35092.5 Da

IEP (calculated)

10.178

GRAVY (calculated)

-0.487

Length

327 amino acids

Sequence
(BLAST)

001: MASLLRWKDR YVKERLLGLS GLSCSSAAST SVVASTGRAI DRHSPRLRDS HRRLPPSLPK PPCSPFSSAK DSSTSMKQQQ LCHYDDDGKD RRKKKSTEAD
101: AGSGRGCSST TPSSEHRKNK KKEVQLQQVS PASSSRFLLN SSRLMMQSDD EITVVDSLPP LPSPRPSFIK DADDDIEIFP TSHGDAVMPA GPSRPQLLAP
201: PVELFAEPSA SGAGSSSSSS EIGRGHVVAG DNTVVVRSCS TRTGQNQVVV LRVSLHCKGC AGKVKKHISK MEGVTSFDID IATKKVTVVG DVTPLGVLNS
301: ISKVKSAQFW TDTRSYLSTP PRASATF

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.