Factsheet for Zm00001d027860_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031132_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	Zm00001d031132_P002	AT1G66240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	80.36	73.77
CDY26408	Canola	golgi, nucleus, plasma membrane	36.9	35.84
KXG20553	Sorghum	plasma membrane	88.1	14.7
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	89.29	14.51
Zm00001d053783_P001	Maize	plasma membrane	82.14	13.83
GSMUA_Achr5P26800_001	Banana	cytosol	76.19	13.68
TraesCS7D01G467100.1	Wheat	cytosol	80.95	13.59
TraesCS7B01G382300.1	Wheat	cytosol	80.95	13.59
TraesCS7A01G480100.1	Wheat	cytosol	80.95	13.59
Os06t0665800-01	Rice	cytosol	80.36	13.46
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	80.95	13.29
GSMUA_Achr8P06970_001	Banana	cytosol	73.21	13.03
PGSC0003DMT400024409	Potato	cytosol	69.64	11.68
Solyc02g068490.2.1	Tomato	cytosol	69.64	11.66
KRH37212	Soybean	cytosol	68.45	11.66
VIT_01s0011g01360.t01	Wine grape	cytosol	69.05	11.6
KRH12191	Soybean	cytosol	68.45	11.55
KRH42397	Soybean	cytosol	67.86	11.47
KRH58516	Soybean	cytosol	67.86	11.47
CDY50771	Canola	cytosol	66.67	11.27
CDY39400	Canola	cytosol	66.67	11.21
AT5G44790.1	Thale cress	cytosol	66.67	11.19
Bra027573.1-P	Field mustard	cytosol	66.07	11.08
Bra025102.1-P	Field mustard	cytosol	64.88	10.93
Zm00001d002708_P001	Maize	mitochondrion	49.4	8.31
Zm00001d002705_P002	Maize	cytosol, plastid	50.0	8.11
Zm00001d015829_P003	Maize	plasma membrane	45.83	7.86
Zm00001d027884_P003	Maize	plastid	33.93	6.32
Zm00001d052801_P004	Maize	plastid	35.12	6.1
Zm00001d005190_P001	Maize	plastid	26.79	5.01
Zm00001d005189_P001	Maize	plasma membrane	26.79	4.67
Zm00001d019226_P003	Maize	cytosol	24.4	4.59
Zm00001d014669_P007	Maize	plasma membrane	29.76	4.55
Zm00001d014569_P002	Maize	plastid	22.02	4.5
CDY69037	Canola	cytosol	10.71	3.08
CDY67659	Canola	cytosol	10.71	3.03
CDY67984	Canola	cytosol, peroxisome, plasma membrane	1.19	0.82

Protein Annotations

MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	UniProt:A0A1D6JQ62	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023299
ProteinID:ONL94128.1	PFAM:PF00122	PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	SUPFAM:SSF81660	SUPFAM:SSF81665
TMHMM:TMhelix	UniParc:UPI0008441589	EnsemblPlantsGene:Zm00001d027860	EnsemblPlants:Zm00001d027860_P001	EnsemblPlants:Zm00001d027860_T001	SEG:seg

Description

Copper-transporting ATPase RAN1

Coordinates

chr1:-:15530277..15532211

Molecular Weight (calculated)

17815.7 Da

IEP (calculated)

7.974

GRAVY (calculated)

0.662

Length

168 amino acids

Sequence
(BLAST)

001: MRRPAPPFTA PSSSSQVASI FVPIVITLSI VTFSAWFLCG WLGAYPNSWV AENSNCFVFS LMFAISVVVI ACPCALGLAT PTAVMVATGI GANHGVLVKG
101: GDALERAQPQ GKAVVTAAKV FSGMDLGDFL TLVASAEASS EHPLAKAILD YALHFPFLWQ ASFIKRWH

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.