Factsheet for Solyc02g068490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g007200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	Solyc11g007200.1.1	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024409	Potato	cytosol	97.91	98.0
VIT_01s0011g01360.t01	Wine grape	cytosol	79.36	79.6
KRH58516	Soybean	cytosol	76.97	77.67
KRH37212	Soybean	cytosol	76.17	77.48
KRH12191	Soybean	cytosol	76.67	77.21
KRH42397	Soybean	cytosol	75.87	76.56
CDY50771	Canola	cytosol	73.98	74.65
CDY39400	Canola	cytosol	74.28	74.57
AT5G44790.1	Thale cress	cytosol	74.08	74.23
Bra025102.1-P	Field mustard	cytosol	73.68	74.12
Bra027573.1-P	Field mustard	cytosol	72.08	72.16
Zm00001d027860_P001	Maize	plasma membrane	11.66	69.64
GSMUA_Achr8P06970_001	Banana	cytosol	65.4	69.49
GSMUA_Achr5P26800_001	Banana	cytosol	64.81	69.44
EES06348	Sorghum	cytosol	68.49	68.91
CDY69037	Canola	cytosol	40.08	68.84
Os02t0172600-00	Rice	cytosol	68.69	68.83
TraesCS6A01G156900.1	Wheat	cytosol	68.39	68.81
TraesCS6D01G146500.1	Wheat	cytosol	68.3	68.64
Zm00001d053783_P001	Maize	plasma membrane	68.0	68.34
Os06t0665800-01	Rice	cytosol	68.2	68.2
TraesCS7D01G467100.1	Wheat	cytosol	68.0	68.13
KXG20553	Sorghum	plasma membrane	68.39	68.12
TraesCS6B01G184800.1	Wheat	cytosol	66.0	68.11
TraesCS7A01G480100.1	Wheat	cytosol	67.7	67.83
TraesCS7B01G382300.1	Wheat	cytosol	67.6	67.73
CDY67659	Canola	cytosol	39.98	67.39
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	65.5	64.22
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	11.66	63.93
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	63.31	61.41
HORVU6Hr1G031960.1	Barley	plastid	30.61	53.48
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	15.65	52.86
Solyc08g080870.2.1	Tomato	cytosol	47.86	50.31
Solyc08g080890.2.1	Tomato	cytosol	43.37	48.88
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	28.71	42.67
Solyc01g105160.2.1	Tomato	plastid	23.83	32.92
Solyc08g061610.2.1	Tomato	plastid	27.92	31.32
Solyc02g092920.2.1	Tomato	plastid	18.44	22.53
Solyc07g009130.2.1	Tomato	plastid	21.93	16.9

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0009719	GO:GO:0009723	GO:GO:0009987	GO:GO:0010119	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872	GO:GO:0099132
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS
InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	UniProt:K4B7I1	InterPro:P-typ_ATPase_IB	PFAM:PF00122
PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154	ScanProsite:PS01047
PFscan:PS50846	PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008	SUPFAM:SSF56784
SUPFAM:SSF81653	SUPFAM:SSF81665	EnsemblPlantsGene:Solyc02g068490.2	EnsemblPlants:Solyc02g068490.2.1	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0002767AF6	SEG:seg	:	:

Description

Copper-transporting ATPase RAN1 [Source:Projected from Arabidopsis thaliana (AT5G44790) UniProtKB/Swiss-Prot;Acc:Q9S7J8]

Coordinates

chr2:-:38425065..38433396

Molecular Weight (calculated)

107331.0 Da

IEP (calculated)

4.885

GRAVY (calculated)

0.301

Length

1003 amino acids

Sequence
(BLAST)

0001: MAPSMRDVQL TVTGKSSSAA AEDDIDGSGE EVRLLDSYDE VNLDKLDENL RRIQVRVTGM TCAACSTSVE GALMGVNGVV KASVALLQNK ADVVFDPTLV
0101: KDEDITNAIE DAGFEAELLS EPAASHTNPH GTVVGQFTIG GMTCAACVNS VEGILKNLPG VRKAVVALAT SLGEVEYDST IISKDDIANA IEDAGFEASF
0201: VQSSEQDKIV LGVIGISGEM DAQFLEGILS KLHGVKQFCF DRVSSELEVV FDPEVIGSRS LVDGIEGGSS GKFKLVVKNP YTRMASRDLE ESSRMFRLFT
0301: ASLSLSVPVI LMRVLCPRIP LLYSLLIWQC GPFQMGDWLK WALVTVVQFG IGKRFYIAAG RALRNGSTNM DVLVALGTTA SYVYSVCALL YGAVSGFWSP
0401: TYFETSAMLI TFVLLGKYLE TLAKGKTSGA IKKLVELTPA TATLLVKDKG GKVVGEREID ALLIQPGDIL KVLPGTKVPV DGVVVWGSSH VNESMVTGES
0501: APVLKEIDSV VIGGTINLHG SLHIQGTKVG SNTVLSQIIS LVETAQMSKA PIQKFADYIA SIFVPTVVTM SLLTFFGWYV AGVLGGYPEE WLPENGNYFV
0601: FSLMFAISVV VIACPCALGL ATPTAVMVAT GVGANNGVLI KGGDALERAQ KISHVIFDKT GTLTQGNAKV TTVKIFNEMD RGEFLTLVAS AEASSEHPLA
0701: KAILEYARHF HFFDEPSNTS ELQTYSEQAK FSGWLHDVSD FSVLPGKGIQ CSIDGKWILV GNRKLLTENG ITIPSNVENF VVELEESART GILVAHDNIV
0801: IGALGIADPL KREAAVVVEG LIKMGVKPIM VTGDNWRTAR AVAKEVGIQD VRAEVLPAGK AEVVRSFQKG GSIVAMVGDG INDSPALAAA DVGMAIGAGT
0901: DIAIEAAEYV LMRSNLEDVI IAIDLSRKTF ARIRWNYIFA MAYNVISIPV AAGVFFPFLK LELPPWVAGA CMAMSSVSVV CSSLYLKRYK KPRLTTILEI
1001: TIE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.