Factsheet for Solyc01g105160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0142g00400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	31.68	83.94
VIT_12s0142g00330.t01	Wine grape	golgi, plasma membrane	43.66	71.56
KRH58274	Soybean	plasma membrane	72.45	71.37
Os08t0486100-01	Rice	cytosol, plasma membrane	18.32	66.5
OQU81022	Sorghum	cytosol	68.04	62.77
GSMUA_Achr7P12640_001	Banana	cytosol	71.63	62.28
TraesCS7A01G239700.1	Wheat	cytosol	68.59	62.02
HORVU7Hr1G048770.2	Barley	endoplasmic reticulum, plasma membrane	26.86	61.71
KRH42155	Soybean	plastid	71.21	55.18
CDX75363	Canola	plastid	69.42	53.79
CDX68986	Canola	plastid	69.28	53.74
Bra011450.1-P	Field mustard	plastid	69.42	53.62
AT4G33520.2	Thale cress	plastid	69.42	53.11
TraesCS7D01G237500.1	Wheat	plastid	68.59	52.31
TraesCS7B01G135300.1	Wheat	plastid	68.59	52.31
Zm00001d052801_P004	Maize	plastid	68.87	51.65
Solyc08g061610.2.1	Tomato	plastid	43.53	35.35
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	13.91	34.01
Solyc08g080890.2.1	Tomato	cytosol	33.61	27.42
Solyc08g080870.2.1	Tomato	cytosol	33.47	25.47
Solyc02g068490.2.1	Tomato	cytosol	32.92	23.83
Solyc02g092920.2.1	Tomato	plastid	24.79	21.92
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	18.46	19.85
Solyc07g009130.2.1	Tomato	plastid	25.07	13.98

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005375	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009767	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016531	GO:GO:0016787	GO:GO:0019829	GO:GO:0035434
GO:GO:0055070	GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299
UniProt:K4B286	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	PANTHER:PTHR43520	PANTHER:PTHR43520:SF8	InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653
SUPFAM:SSF81665	EnsemblPlantsGene:Solyc01g105160.2	EnsemblPlants:Solyc01g105160.2.1	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01511	TIGRFAMs:TIGR01525
TMHMM:TMhelix	UniParc:UPI0002768D88	SEG:seg	:	:	:

Description

Copper-transporting ATPase PAA1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G33520) UniProtKB/Swiss-Prot;Acc:Q9SZC9]

Coordinates

chr1:-:93433079..93443404

Molecular Weight (calculated)

77108.6 Da

IEP (calculated)

7.923

GRAVY (calculated)

0.178

Length

726 amino acids

Sequence
(BLAST)

001: MNAKRIQLKE SGRALAVSWA LCGVCLVGHL SHFLGANASW IHAIHSTGFH MTLSLFTLLV PGRQLIIDGL KSLIKGSPNM NTLVGLGALS SFAVSSMAAL
101: IPKLGWKTFF EEPVMLIAFV LLGRNLEQRA KIKATSDMTG LLNVLPSKAR LVVSGDLGES SSTVEVPSSS LSVGDQIIVL PGDRVPADGI VRAGRSTVDE
201: SSFTGEPLPV TKLPGAEVAA GSINLNGTLT VEVRRPGGET AIGDIVRLVE EAQSREAPVQ RLADKVAGHF TYGVMTLSAA TFMFWNLFGA RILPPSLYHG
301: SVVSLALQLS CTVLVIACPC ALGLATPTAV MVGTSLGATK GLLLRGGSVL ERFSTVNTIV FDKTGTLTIG RPVVTKVVSQ GQGHQEDVDA RQDSTSPCQW
401: SEVDILKFAA GVESNTNHPI GKAIIEAAQT AKSPKLKVLD GTFMEEPGSG AVGYIDDKRI SVGTLEWVKR HGVLENPFQE SDDFKNQSVV YVGVDGVLAG
501: LIYVEDQIRE DARHVVESLT KQGISTYLLS GDKKNAAEYV ASVVGIPKEN VYYGVKPDEK NKFVSRLQKD QKVVAMVGDG INDAAALASA HVGIAIGGGV
601: GAASDVSSIV LMHDRLSQLL DALELSRLTM KTVKQNLWWA FGYNIVGIPV AAGVLLPSTG TMLTPSIAGA LMGLSSIGVM TNSLLLRLKF KSRQKEIHGQ
701: SVIVDIPFDS DSLNQEKLKH PYPTSR

Best Arabidopsis Sequence Match ( AT4G33520.2 )
(BLAST)

001: MESTLSAFST VKATAMARSS GGPSLPLLTI SKALNRHFTG ARHLHPLLLA RCSPSVRRLG GFHGSRFTSS NSALRSLGAA VLPVIRHRLE CLSSSSPSFR
101: SISSGGGSGF GGYNGGSGGG GGGGSESGDS KSKLGANASD GVSVPSSDII ILDVGGMTCG GCSASVKKIL ESQPQVASAS VNLTTETAIV WPVPEAKSVP
201: DWQKSLGETL ANHLTNCGFQ STPRDLVTEN FFKVFETKTK DKQARLKESG RELAVSWALC AVCLVGHLTH FLGVNAPWIH AIHSTGFHVS LCLITLLGPG
301: RKLVLDGIKS LLKGSPNMNT LVGLGALSSF SVSSLAAMIP KLGWKTFFEE PVMLIAFVLL GRNLEQRAKI KATSDMTGLL SVLPSKARLL LDGDLQNSTV
401: EVPCNSLSVG DLVVILPGDR VPADGVVKSG RSTIDESSFT GEPLPVTKES GSQVAAGSIN LNGTLTVEVH RSGGETAVGD IIRLVEEAQS REAPVQQLVD
501: KVAGRFTYGV MALSAATFTF WNLFGAHVLP SALHNGSPMS LALQLSCSVL VVACPCALGL ATPTAMLVGT SLGARRGLLL RGGDILEKFS LVDTVVFDKT
601: GTLTKGHPVV TEVIIPENPR HNLNDTWSEV EVLMLAAAVE SNTTHPVGKA IVKAARARNC QTMKAEDGTF TEEPGSGAVA IVNNKRVTVG TLEWVKRHGA
701: TGNSLLALEE HEINNQSVVY IGVDNTLAAV IRFEDKVRED AAQVVENLTR QGIDVYMLSG DKRNAANYVA SVVGINHERV IAGVKPAEKK NFINELQKNK
801: KIVAMVGDGI NDAAALASSN VGVAMGGGAG AASEVSPVVL MGNRLTQLLD AMELSRQTMK TVKQNLWWAF GYNIVGIPIA AGVLLPLTGT MLTPSMAGAL
901: MGVSSLGVMT NSLLLRYRFF SNRNDKNVKP EPKEGTKQPH ENTRWKQSS

Arabidopsis Description

PAA1Copper-transporting ATPase PAA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SZC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.