Factsheet for Solyc02g092920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064232	Potato	plastid	97.81	98.29
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	14.01	68.86
VIT_07s0129g01040.t01	Wine grape	plastid	68.94	68.28
CDY67922	Canola	cytosol	19.61	67.65
KRH04519	Soybean	plastid	65.65	65.97
TraesCS7B01G337700.1	Wheat	extracellular, plasma membrane	32.28	65.92
CDX75636	Canola	mitochondrion	65.04	65.36
KRH57989	Soybean	plasma membrane, plastid	66.14	65.26
Bra011750.1-P	Field mustard	plastid	64.92	65.16
CDX69288	Canola	plastid	64.56	64.71
Bra039194.1-P	Field mustard	plastid	60.78	64.47
HORVU5Hr1G066370.30	Barley	golgi, mitochondrion, peroxisome	54.08	64.35
AT4G37270.1	Thale cress	plasma membrane, plastid	64.19	64.35
CDY46080	Canola	plastid	51.52	62.67
TraesCS7D01G428700.1	Wheat	plastid	61.88	61.5
TraesCS7A01G439100.1	Wheat	plastid	61.88	61.35
Os06t0690700-01	Rice	plastid	61.14	61.07
Zm00001d014569_P002	Maize	plastid	61.14	61.0
KXG20697	Sorghum	plastid	61.27	60.75
GSMUA_Achr9P16140_001	Banana	plastid	62.97	60.05
HORVU7Hr1G100160.2	Barley	plastid	61.63	58.09
Solyc11g062120.1.1	Tomato	cytosol, peroxisome, plasma membrane	9.62	26.6
Solyc01g105160.2.1	Tomato	plastid	21.92	24.79
Solyc08g061610.2.1	Tomato	plastid	22.29	20.47
Solyc08g080890.2.1	Tomato	cytosol	21.56	19.89
Solyc08g080870.2.1	Tomato	cytosol	21.92	18.87
Solyc02g068490.2.1	Tomato	cytosol	22.53	18.44
Solyc11g062100.1.1	Tomato	cytosol, peroxisome, plasma membrane	12.18	14.81
Solyc07g009130.2.1	Tomato	plastid	20.34	12.83

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006812	GO:GO:0006878	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009642	GO:GO:0009941	GO:GO:0009987	GO:GO:0015633	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0019725	GO:GO:0019829	GO:GO:0055069	GO:GO:0071577
GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	UniProt:K4BD88
InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	ScanProsite:PS00154	PANTHER:PTHR43079
InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	EnsemblPlantsGene:Solyc02g092920.2	EnsemblPlants:Solyc02g092920.2.1
TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI00027682FD	SEG:seg	:

Description

Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G37270) UniProtKB/Swiss-Prot;Acc:Q9M3H5]

Coordinates

chr2:+:53867512..53876118

Molecular Weight (calculated)

89089.0 Da

IEP (calculated)

8.193

GRAVY (calculated)

0.130

Length

821 amino acids

Sequence
(BLAST)

001: MEALRLSTSF SGINCSIYKS TRRLKVNRNL LFSSLKPISS VPIRSSAQFR GRIHCSACSC SSHSHQHHHH HHDHSHDHHN HHHHHHHHGH DEGDGKLTKF
101: QEVFLKFANA IRWTQLANYL RENLELCCCS AVLFIAAAVC PYFLPGPAVL PLQRIFALIA FPLVGVSASL DALVDITGGK INIHVLMALA AFASVFMGNV
201: LEGGLLLAMF NLAHIAEEYF TSRSKGDVKE LKENHPEFAL VLHVDNQTLP SFTDLSYIEV PVSDLEVGSF ILVKAGESVP VDCEVSRGRS TITIEHLTGE
301: VKPLDKKEGD NIPGGARNLD GMLIVKAKKT WKESMLSRIV QLTEEAQLSK PRLQRWLDKF GEQYSKAVVL LSLAVAFLGP FFFKWPFFST TACRGSIYRA
401: LGLMVAASPC ALAVAPLAYA TAISACAKRG ILLKGGQVLD ALASCHSIAF DKTGTLTTGE FMCKAIEPIH GHAKSVGKGF ASCCNPSCEK EALAVAAAME
501: RGTTHPIGRA VVDHSTGKDL PSISVESFEN LPGRGIIATL SSFEPRLGGG KPWKAFLGSV EYITSLCDSE DESRRVEEAV STSSHGVDFV RAALSVNNQK
601: VTLFHFEDKP RPGVLDVIQT LQNQAKLRVI MLTGDHKASA KRVAKTVGIK EVNCSLKPED KLYHVTSISR DTGGLIMVGD GINDAPALAA ATVGIVLAER
701: ASAAAVAVAD VLLLQDNISG VPFCVAKSRQ TTSLIKQNVV LALCSIILAS LTSVMGFLPL WLTVLLHEGG TLLVCLNSVR ALNPPTWSWR EDISQIIDRL
801: RSLIMFLRHG TLPSTIQAAH L

Best Arabidopsis Sequence Match ( AT4G37270.1 )
(BLAST)

001: MEPATLTRSS SLTRFPYRRG LSTLRLARVN SFSILPPKTL LRQKPLRISA SLNLPPRSIR LRAVEDHHHD HHHDDEQDHH NHHHHHHQHG CCSVELKAES
101: KPQKMLFGFA KAIGWVRLAN YLREHLHLCC SAAAMFLAAA VCPYLAPEPY IKSLQNAFMI VGFPLVGVSA SLDALMDIAG GKVNIHVLMA LAAFASVFMG
201: NALEGGLLLA MFNLAHIAEE FFTSRSMVDV KELKESNPDS ALLIEVHNGN VPNISDLSYK SVPVHSVEVG SYVLVGTGEI VPVDCEVYQG SATITIEHLT
301: GEVKPLEAKA GDRVPGGARN LDGRMIVKAT KAWNDSTLNK IVQLTEEAHS NKPKLQRWLD EFGENYSKVV VVLSLAIAFL GPFLFKWPFL STAACRGSVY
401: RALGLMVAAS PCALAVAPLA YATAISSCAR KGILLKGAQV LDALASCHTI AFDKTGTLTT GGLTCKAIEP IYGHQGGTNS SVITCCIPNC EKEALAVAAA
501: MEKGTTHPIG RAVVDHSVGK DLPSIFVESF EYFPGRGLTA TVNGVKTVAE ESRLRKASLG SIEFITSLFK SEDESKQIKD AVNASSYGKD FVHAALSVDQ
601: KVTLIHLEDQ PRPGVSGVIA ELKSWARLRV MMLTGDHDSS AWRVANAVGI TEVYCNLKPE DKLNHVKNIA REAGGGLIMV GEGINDAPAL AAATVGIVLA
701: QRASATAIAV ADILLLRDNI TGVPFCVAKS RQTTSLVKQN VALALTSIFL AALPSVLGFV PLWLTVLLHE GGTLLVCLNS VRGLNDPSWS WKQDIVHLIN
801: KLRSQEPTSS SSNSLSSAH

Arabidopsis Description

HMA1Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3H5]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.