Factsheet for VIT_07s0129g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67922	Canola	cytosol	21.71	75.63
KRH04519	Soybean	plastid	71.05	72.09
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	14.23	70.66
KRH57989	Soybean	plasma membrane, plastid	70.81	70.55
PGSC0003DMT400064232	Potato	plastid	68.15	69.16
CDX75636	Canola	mitochondrion	68.03	69.03
Solyc02g092920.2.1	Tomato	plastid	68.28	68.94
TraesCS7B01G337700.1	Wheat	extracellular, plasma membrane	33.41	68.91
Bra011750.1-P	Field mustard	plastid	67.91	68.83
AT4G37270.1	Thale cress	plasma membrane, plastid	67.67	68.5
CDX69288	Canola	plastid	67.43	68.25
Bra039194.1-P	Field mustard	plastid	63.57	68.09
HORVU5Hr1G066370.30	Barley	golgi, mitochondrion, peroxisome	55.61	66.81
CDY46080	Canola	plastid	53.92	66.22
Os06t0690700-01	Rice	plastid	65.14	65.69
TraesCS7D01G428700.1	Wheat	plastid	65.14	65.38
TraesCS7A01G439100.1	Wheat	plastid	65.26	65.34
Zm00001d014569_P002	Maize	plastid	64.29	64.76
KXG20697	Sorghum	plastid	64.42	64.49
GSMUA_Achr9P16140_001	Banana	plastid	66.71	64.23
HORVU7Hr1G100160.2	Barley	plastid	64.66	61.54
VIT_02s0025g03640.t01	Wine grape	golgi, peroxisome, plasma membrane	17.25	28.83
VIT_12s0142g00330.t01	Wine grape	golgi, plasma membrane	13.87	25.96
VIT_11s0103g00370.t01	Wine grape	plasma membrane	19.78	22.84
VIT_12s0142g00400.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	7.36	22.26
VIT_04s0008g01960.t01	Wine grape	plastid	22.32	20.83
VIT_06s0004g01890.t01	Wine grape	plasma membrane	22.32	18.95
VIT_01s0011g01360.t01	Wine grape	cytosol	22.32	18.5
VIT_02s0025g03630.t01	Wine grape	cytosol	22.92	9.81

Protein Annotations

EntrezGene:100255947	wikigene:100255947	Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000
InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	ProteinID:CBI33768	ProteinID:CBI33768.3
UniProt:D7TTE6	EMBL:FN596246	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006812	GO:GO:0006878	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009642	GO:GO:0009941	GO:GO:0009987	GO:GO:0015633	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0019725	GO:GO:0019829	GO:GO:0055069	GO:GO:0071577
GO:GO:0099132	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	EntrezGene:LOC100255947
wikigene:LOC100255947	InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120
ScanProsite:PS00154	PANTHER:PTHR43079	InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665
TIGR:TC68735	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0001983981	ArrayExpress:VIT_07s0129g01040
EnsemblPlantsGene:VIT_07s0129g01040	EnsemblPlants:VIT_07s0129g01040.t01	unigene:Vvi.11004	RefSeq:XP_002278549	RefSeq:XP_002278549.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:16179758..16207177

Molecular Weight (calculated)

90161.6 Da

IEP (calculated)

8.198

GRAVY (calculated)

0.143

Length

829 amino acids

Sequence
(BLAST)

001: METLPFRGVP SLSCARRRVN NSFEPFHHRT LFFYNLSLPK SLFPPLNFPL LPRHRALQFV AKAEDSHHHH HHPHNDHHHD DHHHHHGHGH GHHHHHHGSG
101: STLSRTQESF LRIAKAIRWA DLADFLRENL HLCCCSTGLF LAAAACPYLI PKPAVKPLQN AFIFVAFPLV GVSASLDALI DITGGKVNIH VLMALAAFAS
201: VFMGNPLEGG LLLAMFNLAH IAEEYFTSRS VVDVKELKEN YPDFALVLEV NNNKPPNFSH LAYKKVPVHD VEVGSYILVK DGEFVPVDCE VFQGRSTITI
301: EHLTGEMKPV ERTVGERIPG GAHNLSGMMI VKATKTWKES TLSRIVQLTE EAQLNKPKLQ RWLDEFGDHY SKVVVVLSIA VAFIGPLLFK WPFISTSVCR
401: GSVYRALGLM VAASPCALAV APLAYAIAIS ACARKGILLK GGHVLDALAS CHTIAFDKTG TLTSGKLTFK AIEPIYGHGV RAYRSKFVSC CIPSCEIEAL
501: AVAAAMERGT THPIGRAVVD HCVGKDLPPV AVENFESLPG RGLSATLTSI ESGIGGGELL KASIGSLEYI LSLCKSEDEL KKIKEAMSTS SYGSDFVHAA
601: LSVNKKVTLL HFEDEPRPGV LDVILALQDQ AKLRVMMLTG DHESSAWRVA NAVGIKEVYC SLKPEDKLNH VKSISREAGG GLIMVGDGIN DAPALAAATV
701: GIVLAQRASG TAIAVADVLL LRDNISAVPF CVSKSRQTTS LVKQNVALAL SCILLASLPS VLGFLPLWLT VLLHEGGTLL VCLNSVRALN EPTWSWKQDL
801: VPVVDKFKST IMFLRRHTTT SSSTRAAPL

Best Arabidopsis Sequence Match ( AT4G37270.1 )
(BLAST)

001: MEPATLTRSS SLTRFPYRRG LSTLRLARVN SFSILPPKTL LRQKPLRISA SLNLPPRSIR LRAVEDHHHD HHHDDEQDHH NHHHHHHQHG CCSVELKAES
101: KPQKMLFGFA KAIGWVRLAN YLREHLHLCC SAAAMFLAAA VCPYLAPEPY IKSLQNAFMI VGFPLVGVSA SLDALMDIAG GKVNIHVLMA LAAFASVFMG
201: NALEGGLLLA MFNLAHIAEE FFTSRSMVDV KELKESNPDS ALLIEVHNGN VPNISDLSYK SVPVHSVEVG SYVLVGTGEI VPVDCEVYQG SATITIEHLT
301: GEVKPLEAKA GDRVPGGARN LDGRMIVKAT KAWNDSTLNK IVQLTEEAHS NKPKLQRWLD EFGENYSKVV VVLSLAIAFL GPFLFKWPFL STAACRGSVY
401: RALGLMVAAS PCALAVAPLA YATAISSCAR KGILLKGAQV LDALASCHTI AFDKTGTLTT GGLTCKAIEP IYGHQGGTNS SVITCCIPNC EKEALAVAAA
501: MEKGTTHPIG RAVVDHSVGK DLPSIFVESF EYFPGRGLTA TVNGVKTVAE ESRLRKASLG SIEFITSLFK SEDESKQIKD AVNASSYGKD FVHAALSVDQ
601: KVTLIHLEDQ PRPGVSGVIA ELKSWARLRV MMLTGDHDSS AWRVANAVGI TEVYCNLKPE DKLNHVKNIA REAGGGLIMV GEGINDAPAL AAATVGIVLA
701: QRASATAIAV ADILLLRDNI TGVPFCVAKS RQTTSLVKQN VALALTSIFL AALPSVLGFV PLWLTVLLHE GGTLLVCLNS VRGLNDPSWS WKQDIVHLIN
801: KLRSQEPTSS SSNSLSSAH

Arabidopsis Description

HMA1Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3H5]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.