CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G337700.1	Wheat	extracellular, plasma membrane	69.75	41.29
CDY46080	Canola	plastid	97.9	34.52
Bra039194.1-P	Field mustard	plastid	97.9	30.1
CDY67984	Canola	cytosol, peroxisome, plasma membrane	26.89	26.12
CDX75636	Canola	mitochondrion	85.29	24.85
CDX69288	Canola	plastid	84.87	24.66
HORVU5Hr1G066370.30	Barley	golgi, mitochondrion, peroxisome	67.65	23.33
KRH04519	Soybean	plastid	76.47	22.28
VIT_07s0129g01040.t01	Wine grape	plastid	75.63	21.71
KRH57989	Soybean	plasma membrane, plastid	75.63	21.63
Os06t0690700-01	Rice	plastid	71.01	20.56
Zm00001d014569_P002	Maize	plastid	70.17	20.29
TraesCS7D01G428700.1	Wheat	plastid	69.75	20.1
GSMUA_Achr9P16140_001	Banana	plastid	72.69	20.09
KXG20697	Sorghum	plastid	69.75	20.05
TraesCS7A01G439100.1	Wheat	plastid	69.75	20.05
PGSC0003DMT400064232	Potato	plastid	68.49	19.95
Solyc02g092920.2.1	Tomato	plastid	67.65	19.61
HORVU7Hr1G100160.2	Barley	plastid	70.17	19.17
CDY51647	Canola	golgi, plasma membrane, vacuole	17.65	12.14
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	27.31	11.9
CDY69827	Canola	plasma membrane	26.47	10.0
CDY69511	Canola	plasma membrane	28.57	9.5
CDX68625	Canola	plasma membrane	28.57	9.32
CDY28206	Canola	plasma membrane	28.15	9.29
CDX68627	Canola	cytosol, plasma membrane, vacuole	25.21	7.92
CDY28160	Canola	cytosol	24.79	7.78
CDY62400	Canola	plasma membrane	27.73	7.57
CDY30170	Canola	cytosol, peroxisome, plasma membrane	27.31	7.43
CDX91834	Canola	cytosol, peroxisome, plasma membrane	26.47	7.34
CDX92394	Canola	plastid	25.63	6.89
CDY16605	Canola	plastid	25.63	6.89
CDX68986	Canola	plastid	26.89	6.84
CDX75363	Canola	plastid	26.89	6.83
CDY50396	Canola	cytosol	26.05	6.37
CDY25498	Canola	mitochondrion	27.31	6.29
CDY49160	Canola	cytosol	25.63	6.27
CDY50771	Canola	cytosol	26.05	6.24
CDY39400	Canola	cytosol	26.05	6.21
CDY34353	Canola	mitochondrion	26.89	6.2
CDY51090	Canola	cytosol	26.47	5.79
CDY36489	Canola	cytosol	26.05	5.4
CDY08717	Canola	cytosol, nucleus, plasma membrane	26.47	4.04
CDX93870	Canola	endoplasmic reticulum, plasma membrane	12.18	3.97
CDY51648	Canola	cytosol	0.84	2.94
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	1.68	2.4
CDY72630	Canola	golgi, plasma membrane, vacuole	0.0	0.0
CDY69037	Canola	cytosol	0.0	0.0
CDY26408	Canola	golgi, nucleus, plasma membrane	0.0	0.0
CDY67659	Canola	cytosol	0.0	0.0
CDY51690	Canola	cytosol, plasma membrane, vacuole	0.0	0.0
CDY51646	Canola	cytosol, plasma membrane, vacuole	0.0	0.0

Protein Annotations

MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078JR89	UniProt:A0A078JR89	InterPro:ATPase_P-typ_cyto_dom_N
EnsemblPlants:CDY67922	ProteinID:CDY67922	ProteinID:CDY67922.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00067679001	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023214	InterPro:IPR023299	PFAM:PF00702	PRINTS:PR00119	PANTHER:PTHR43079	InterPro:P_typ_ATPase
SUPFAM:SSF56784	TIGRFAMs:TIGR01494	TMHMM:TMhelix	UniParc:UPI0004EDAF2D	SEG:seg	:

Description

BnaC08g49210DBnaC08g49210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR89]

Coordinates

chrLK036659:-:5757..7196

Molecular Weight (calculated)

25521.2 Da

IEP (calculated)

8.088

GRAVY (calculated)

0.223

Length

238 amino acids

Sequence
(BLAST)

001: MSKLQKASLG SVEFITSLFK SQDASRKIKD AVNSSSYGND FVHALLSLDQ KVTLIHLEDQ PRPEVPKVIA ELKSWGRLRI MMLTGDHESS AWRVANAVGI
101: DEVYCNLKPE DKLNHVKNIS RDSGGGLIMV GEGINDGPAL AAATVGFVLA QRASGTAIAV ADVLLLRDNI TGVPFCIAKS RQTTTLVKQN VAIALTLILL
201: AALPSVLGYL PLWLTVLLHE GGTLLVCLNS IRGLNDPS

Best Arabidopsis Sequence Match ( AT4G37270.1 )
(BLAST)

001: MEPATLTRSS SLTRFPYRRG LSTLRLARVN SFSILPPKTL LRQKPLRISA SLNLPPRSIR LRAVEDHHHD HHHDDEQDHH NHHHHHHQHG CCSVELKAES
101: KPQKMLFGFA KAIGWVRLAN YLREHLHLCC SAAAMFLAAA VCPYLAPEPY IKSLQNAFMI VGFPLVGVSA SLDALMDIAG GKVNIHVLMA LAAFASVFMG
201: NALEGGLLLA MFNLAHIAEE FFTSRSMVDV KELKESNPDS ALLIEVHNGN VPNISDLSYK SVPVHSVEVG SYVLVGTGEI VPVDCEVYQG SATITIEHLT
301: GEVKPLEAKA GDRVPGGARN LDGRMIVKAT KAWNDSTLNK IVQLTEEAHS NKPKLQRWLD EFGENYSKVV VVLSLAIAFL GPFLFKWPFL STAACRGSVY
401: RALGLMVAAS PCALAVAPLA YATAISSCAR KGILLKGAQV LDALASCHTI AFDKTGTLTT GGLTCKAIEP IYGHQGGTNS SVITCCIPNC EKEALAVAAA
501: MEKGTTHPIG RAVVDHSVGK DLPSIFVESF EYFPGRGLTA TVNGVKTVAE ESRLRKASLG SIEFITSLFK SEDESKQIKD AVNASSYGKD FVHAALSVDQ
601: KVTLIHLEDQ PRPGVSGVIA ELKSWARLRV MMLTGDHDSS AWRVANAVGI TEVYCNLKPE DKLNHVKNIA REAGGGLIMV GEGINDAPAL AAATVGIVLA
701: QRASATAIAV ADILLLRDNI TGVPFCVAKS RQTTSLVKQN VALALTSIFL AALPSVLGFV PLWLTVLLHE GGTLLVCLNS VRGLNDPSWS WKQDIVHLIN
801: KLRSQEPTSS SSNSLSSAH

Arabidopsis Description

HMA1Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3H5]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.