CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69511	Canola	plasma membrane	87.73	66.9
CDX68625	Canola	plasma membrane	87.18	65.21
CDY51647	Canola	golgi, plasma membrane, vacuole	33.15	52.31
CDY30170	Canola	cytosol, peroxisome, plasma membrane	77.11	48.11
CDY69827	Canola	plasma membrane	55.49	48.1
CDY62400	Canola	plasma membrane	76.37	47.82
CDY28206	Canola	plasma membrane	61.17	46.32
AT4G30110.1	Thale cress	plasma membrane	73.63	42.27
CDY51648	Canola	cytosol	4.4	35.29
CDX68627	Canola	cytosol, plasma membrane, vacuole	48.9	35.22
CDY28160	Canola	cytosol	48.53	34.96
KRH02816	Soybean	plasma membrane	47.07	34.36
VIT_11s0103g00370.t01	Wine grape	plasma membrane	43.96	33.43
CDY36489	Canola	cytosol	64.65	30.72
CDY51090	Canola	cytosol	60.99	30.61
TraesCS7B01G320900.1	Wheat	plasma membrane	41.76	29.77
GSMUA_Achr5P22660_001	Banana	plasma membrane	42.49	28.4
CDY67922	Canola	cytosol	11.9	27.31
TraesCS7A01G420000.1	Wheat	plasma membrane	45.42	26.41
HORVU7Hr1G097210.4	Barley	plasma membrane	45.05	26.0
KRH19069	Soybean	plasma membrane	52.01	25.91
TraesCS7D01G412800.1	Wheat	plasma membrane	44.32	25.61
TraesCS7A01G419500.1	Wheat	plasma membrane	45.97	25.48
TraesCS7D01G412400.1	Wheat	plasma membrane	46.7	25.42
GSMUA_Achr8P24660_001	Banana	cytosol	43.59	25.29
HORVU7Hr1G097240.1	Barley	plasma membrane	46.7	25.27
HORVU5Hr1G094430.8	Barley	endoplasmic reticulum, plasma membrane	35.35	25.23
TraesCS7B01G320100.2	Wheat	plasma membrane	46.7	24.93
CDY67984	Canola	cytosol, peroxisome, plasma membrane	11.17	24.9
TraesCS5A01G383400.1	Wheat	plasma membrane	36.81	24.63
TraesCS5B01G388000.1	Wheat	plasma membrane	37.36	24.61
CDY26408	Canola	golgi, nucleus, plasma membrane	7.51	23.7
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	40.29	23.53
Os06t0700700-02	Rice	plasma membrane	45.97	23.52
TraesCS5D01G392700.1	Wheat	plasma membrane	36.63	23.45
EER90320	Sorghum	plasma membrane	45.6	23.29
EER96099	Sorghum	cytosol	38.1	23.24
CDY08717	Canola	cytosol, nucleus, plasma membrane	65.2	22.84
Zm00001d014669_P007	Maize	plasma membrane	45.79	22.75
Zm00001d005190_P001	Maize	plastid	37.18	22.61
EER96100	Sorghum	cytosol	37.91	22.19
Zm00001d019226_P003	Maize	cytosol	35.9	21.95
Zm00001d005189_P001	Maize	plasma membrane	37.36	21.16
Os07t0232900-01	Rice	cytosol, nucleus, plasma membrane	38.46	20.92
Solyc07g009130.2.1	Tomato	plastid	48.53	20.35
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	5.13	16.77
CDX75636	Canola	mitochondrion	21.61	14.44
CDX69288	Canola	plastid	21.43	14.29
CDX91834	Canola	cytosol, peroxisome, plasma membrane	20.7	13.17
CDY46080	Canola	plastid	15.75	12.74
CDX92394	Canola	plastid	19.96	12.32
CDY16605	Canola	plastid	19.96	12.32
CDY49160	Canola	cytosol	20.7	11.61
CDY50771	Canola	cytosol	21.06	11.57
CDY39400	Canola	cytosol	21.06	11.51
CDX68986	Canola	plastid	19.6	11.43
CDX75363	Canola	plastid	19.6	11.42
CDY50396	Canola	cytosol	20.33	11.41
CDY34353	Canola	mitochondrion	21.06	11.14
CDY25498	Canola	mitochondrion	20.88	11.03
CDX93870	Canola	endoplasmic reticulum, plasma membrane	13.19	9.86
CDY72630	Canola	golgi, plasma membrane, vacuole	4.03	6.32
CDY69037	Canola	cytosol	2.38	2.23
CDY67659	Canola	cytosol	2.38	2.18
CDY51690	Canola	cytosol, plasma membrane, vacuole	0.37	1.17
CDY51646	Canola	cytosol, plasma membrane, vacuole	0.0	0.0

Protein Annotations

MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078C0H0	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf
InterPro:ATPase_P-typ_cyto_dom_N	EnsemblPlants:CDX68623	ProteinID:CDX68623	ProteinID:CDX68623.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00130267001	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	PFAM:PF00122	PFAM:PF00702	ScanProsite:PS00154
PANTHER:PTHR43338	InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81665	TIGRFAMs:TIGR01494	TMHMM:TMhelix
UniParc:UPI0004EDBE86	SEG:seg	:	:	:	:

Description

BnaC01g08300D

Coordinates

chrLK031789:-:229075..231414

Molecular Weight (calculated)

58898.2 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.204

Length

546 amino acids

Sequence
(BLAST)

001: MAKLVEEAQN SKTETQRFID ECSKYYTPAI ILISLCFVVI PFALKVHNMK HWLHLALVVL VSACPCGLIL STPVATFCAL TKAATSGLLI KGDDYLETLA
101: KIKTVAFDKT GTITRGEFHS HGFQVTLQRY KPAQLALLGI KRGEQVKPSN DCCTFPDIDV DTKGGKTVGY VYLGETLAGV FNLSDACRSG VAQAMKELKS
201: MGIKTAMLTG DNQASAMHAK EQLGNVMDVV NAELLPEGKS QIIKEFKREG PTAMVGDGLN DAPALATADI GISMGVSGSA LATETGHIIL MSNDIRRIPQ
301: AIRLARRGKR KVVENVVLSI TMKGAILALA FAGHPLIWAA VLADVGTCLL VILNSMLLLR DTHVPGGKCH RVEKGEGDVV GDMEAGLLPK RGDEKHCKSG
401: CCGKKNQEKV MKLDKTSEGH GHSGCCDKKQ KDDVMIVGER CESRCCGDKK QPDQDEVKQS CHNEGGNLEE IRLDISVKGC CSRAGADPVV ASLKVKSDGH
501: CESSCCESSR KGNNEEACCE VETNESKCSS RERSHSHSHC HSHHHE

Best Arabidopsis Sequence Match ( AT2G19110.1 )
(BLAST)

0001: MALQNKEEEK KKVKKLQKSY FDVLGICCTS EVPIIENILK SLDGVKEYSV IVPSRTVIVV HDSLLISPFQ IAKALNEARL EANVRVNGET SFKNKWPSPF
0101: AVVSGLLLLL SFLKFVYSPL RWLAVAAVAA GIYPILAKAF ASIKRPRIDI NILVIITVIA TLAMQDFMEA AAVVFLFTIS DWLETRASYK ATSVMQSLMS
0201: LAPQKAIIAE TGEEVEVDEV KVDTVVAVKA GETIPIDGIV VDGNCEVDEK TLTGEAFPVP KQRDSTVWAG TINLNGYICV KTTSLAGDCV VAKMAKLVEE
0301: AQSSKTKSQR LIDKCSQYYT PAIILVSACV AIVPVIMKVH NLKHWFHLAL VVLVSGCPCG LILSTPVATF CALTKAATSG LLIKSADYLD TLSKIKIVAF
0401: DKTGTITRGE FIVIDFKSLS RDINLRSLLY WVSSVESKSS HPMAATIVDY AKSVSVEPRP EEVEDYQNFP GEGIYGKIDG NDIFIGNKKI ASRAGCSTVP
0501: EIEVDTKGGK TVGYVYVGER LAGFFNLSDA CRSGVSQAMA ELKSLGIKTA MLTGDNQAAA MHAQEQLGNV LDVVHGDLLP EDKSRIIQEF KKEGPTAMVG
0601: DGVNDAPALA TADIGISMGI SGSALATQTG NIILMSNDIR RIPQAVKLAR RARRKVVENV CLSIILKAGI LALAFAGHPL IWAAVLVDVG TCLLVIFNSM
0701: LLLREKKKIG NKKCYRASTS KLNGRKLEGD DDYVVDLEAG LLTKSGNGQC KSSCCGDKKN QENVVMMKPS SKTSSDHSHP GCCGDKKEEK VKPLVKDGCC
0801: SEKTRKSEGD MVSLSSCKKS SHVKHDLKMK GGSGCCASKN EKGKEVVAKS CCEKPKQQVE SVGDCKSGHC EKKKQAEDIV VPVQIIGHAL THVEIELQTK
0901: ETCKTSCCDS KEKVKETGLL LSSENTPYLE KGVLIKDEGN CKSGSENMGT VKQSCHEKGC SDEKQTGEIT LASEEETDDQ DCSSGCCVNE GTVKQSFDEK
1001: KHSVLVEKEG LDMETGFCCD AKLVCCGNTE GEVKEQCRLE IKKEEHCKSG CCGEEIQTGE ITLVSEEETE STNCSTGCCV DKEEVTQTCH EKPASLVVSG
1101: LEVKKDEHCE SSHRAVKVET CCKVKIPEAC ASKCRDRAKR HSGKSCCRSY AKELCSHRHH HHHHHHHHHV SA

Arabidopsis Description

HMA4Putative cadmium/zinc-transporting ATPase HMA4 [Source:UniProtKB/Swiss-Prot;Acc:O64474]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.