CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid, secretory
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G337700.1	Wheat	extracellular, plasma membrane	48.5	20.15
Bra039194.1-P	Field mustard	plastid	92.81	20.03
CDY46080	Canola	plastid	74.85	18.52
CDX75636	Canola	mitochondrion	82.04	16.77
CDX69288	Canola	plastid	81.44	16.61
KRH04519	Soybean	plastid	77.84	15.91
HORVU5Hr1G066370.30	Barley	golgi, mitochondrion, peroxisome	64.67	15.65
CDY26408	Canola	golgi, nucleus, plasma membrane	16.17	15.61
KRH57989	Soybean	plasma membrane, plastid	76.65	15.38
VIT_07s0129g01040.t01	Wine grape	plastid	70.66	14.23
PGSC0003DMT400064232	Potato	plastid	68.86	14.08
Solyc02g092920.2.1	Tomato	plastid	68.86	14.01
KXG20697	Sorghum	plastid	68.86	13.89
Os06t0690700-01	Rice	plastid	67.66	13.75
Zm00001d014569_P002	Maize	plastid	67.07	13.61
GSMUA_Achr9P16140_001	Banana	plastid	69.46	13.47
TraesCS7D01G428700.1	Wheat	plastid	66.47	13.44
TraesCS7A01G439100.1	Wheat	plastid	66.47	13.41
HORVU7Hr1G100160.2	Barley	plastid	66.47	12.74
CDY51647	Canola	golgi, plasma membrane, vacuole	23.95	11.56
CDX93870	Canola	endoplasmic reticulum, plasma membrane	27.54	6.3
CDY69827	Canola	plasma membrane	22.75	6.03
CDY69511	Canola	plasma membrane	24.55	5.73
CDX68625	Canola	plasma membrane	23.35	5.34
CDY28160	Canola	cytosol	23.95	5.28
CDX68986	Canola	plastid	29.34	5.24
CDX75363	Canola	plastid	29.34	5.23
CDX68627	Canola	cytosol, plasma membrane, vacuole	23.35	5.15
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	16.77	5.13
CDX92394	Canola	plastid	26.95	5.08
CDY16605	Canola	plastid	26.95	5.08
CDX91834	Canola	cytosol, peroxisome, plasma membrane	25.75	5.01
CDY62400	Canola	plasma membrane	25.75	4.93
CDY30170	Canola	cytosol, peroxisome, plasma membrane	25.75	4.91
CDY50396	Canola	cytosol	27.54	4.73
CDY49160	Canola	cytosol	27.54	4.73
CDY25498	Canola	mitochondrion	27.54	4.45
CDY34353	Canola	mitochondrion	26.95	4.36
CDY50771	Canola	cytosol	25.15	4.23
CDY39400	Canola	cytosol	24.55	4.1
CDY51090	Canola	cytosol	23.35	3.58
CDY36489	Canola	cytosol	23.35	3.39
CDY08717	Canola	cytosol, nucleus, plasma membrane	22.75	2.44
CDY28206	Canola	plasma membrane	8.98	2.08
CDY67922	Canola	cytosol	2.4	1.68
CDY51690	Canola	cytosol, plasma membrane, vacuole	0.6	0.58
CDY51646	Canola	cytosol, plasma membrane, vacuole	0.6	0.51
CDY72630	Canola	golgi, plasma membrane, vacuole	0.6	0.29
CDY51648	Canola	cytosol	0.0	0.0
CDY69037	Canola	cytosol	0.0	0.0
CDY67659	Canola	cytosol	0.0	0.0
CDY67984	Canola	cytosol, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078JK83	UniProt:A0A078JK83	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_cyto_dom_N	EnsemblPlants:CDY67923	ProteinID:CDY67923	ProteinID:CDY67923.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00067680001	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299	PFAM:PF00702
ScanProsite:PS00154	PANTHER:PTHR43079	SUPFAM:SSF81660	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE633F
SEG:seg	:	:	:	:	:

Description

BnaC08g49220DBnaC08g49220D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JK83]

Coordinates

chrLK036659:-:7257..8088

Molecular Weight (calculated)

17392.0 Da

IEP (calculated)

6.078

GRAVY (calculated)

0.301

Length

167 amino acids

Sequence
(BLAST)

001: TACRGSVYRA LGFMMAASPC ALAVAPLAYA TAISSCARKG ILLKGGQVLD ALDSCHTIGF DKTGTLTTGG LTCKAIEPIY GHEEGNNASV TPCCIPNCEK
101: EALAVVAAME KGTTHPIGRA MVDHSIGKDL PSVSVESFEY FPGRGLTATV NCVEVQAIYL LDYVTSI

Best Arabidopsis Sequence Match ( AT4G37270.1 )
(BLAST)

001: MEPATLTRSS SLTRFPYRRG LSTLRLARVN SFSILPPKTL LRQKPLRISA SLNLPPRSIR LRAVEDHHHD HHHDDEQDHH NHHHHHHQHG CCSVELKAES
101: KPQKMLFGFA KAIGWVRLAN YLREHLHLCC SAAAMFLAAA VCPYLAPEPY IKSLQNAFMI VGFPLVGVSA SLDALMDIAG GKVNIHVLMA LAAFASVFMG
201: NALEGGLLLA MFNLAHIAEE FFTSRSMVDV KELKESNPDS ALLIEVHNGN VPNISDLSYK SVPVHSVEVG SYVLVGTGEI VPVDCEVYQG SATITIEHLT
301: GEVKPLEAKA GDRVPGGARN LDGRMIVKAT KAWNDSTLNK IVQLTEEAHS NKPKLQRWLD EFGENYSKVV VVLSLAIAFL GPFLFKWPFL STAACRGSVY
401: RALGLMVAAS PCALAVAPLA YATAISSCAR KGILLKGAQV LDALASCHTI AFDKTGTLTT GGLTCKAIEP IYGHQGGTNS SVITCCIPNC EKEALAVAAA
501: MEKGTTHPIG RAVVDHSVGK DLPSIFVESF EYFPGRGLTA TVNGVKTVAE ESRLRKASLG SIEFITSLFK SEDESKQIKD AVNASSYGKD FVHAALSVDQ
601: KVTLIHLEDQ PRPGVSGVIA ELKSWARLRV MMLTGDHDSS AWRVANAVGI TEVYCNLKPE DKLNHVKNIA REAGGGLIMV GEGINDAPAL AAATVGIVLA
701: QRASATAIAV ADILLLRDNI TGVPFCVAKS RQTTSLVKQN VALALTSIFL AALPSVLGFV PLWLTVLLHE GGTLLVCLNS VRGLNDPSWS WKQDIVHLIN
801: KLRSQEPTSS SSNSLSSAH

Arabidopsis Description

HMA1Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M3H5]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.