CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69511	Canola	plasma membrane	92.33	94.13
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	65.21	87.18
CDY28206	Canola	plasma membrane	76.16	77.12
CDY69827	Canola	plasma membrane	65.21	75.56
CDY62400	Canola	plasma membrane	84.25	70.53
CDY30170	Canola	cytosol, peroxisome, plasma membrane	84.52	70.51
CDY51647	Canola	golgi, plasma membrane, vacuole	32.33	68.21
AT4G30110.1	Thale cress	plasma membrane	82.05	62.99
CDX68627	Canola	cytosol, plasma membrane, vacuole	57.4	55.28
CDY28160	Canola	cytosol	56.3	54.22
VIT_11s0103g00370.t01	Wine grape	plasma membrane	53.15	54.04
KRH02816	Soybean	plasma membrane	55.34	54.01
CDY51090	Canola	cytosol	69.45	46.6
TraesCS7B01G320900.1	Wheat	plasma membrane	48.36	46.08
CDY36489	Canola	cytosol	72.33	45.95
GSMUA_Achr5P22660_001	Banana	plasma membrane	48.49	43.33
HORVU5Hr1G094430.8	Barley	endoplasmic reticulum, plasma membrane	43.15	41.18
KRH19069	Soybean	plasma membrane	59.32	39.51
TraesCS7A01G420000.1	Wheat	plasma membrane	50.68	39.4
TraesCS7D01G412800.1	Wheat	plasma membrane	50.41	38.94
TraesCS5A01G383400.1	Wheat	plasma membrane	43.42	38.85
TraesCS5B01G388000.1	Wheat	plasma membrane	43.84	38.6
HORVU7Hr1G097210.4	Barley	plasma membrane	50.0	38.58
GSMUA_Achr8P24660_001	Banana	cytosol	49.04	38.04
TraesCS7A01G419500.1	Wheat	plasma membrane	50.96	37.77
HORVU7Hr1G097240.1	Barley	plasma membrane	52.05	37.66
TraesCS7D01G412400.1	Wheat	plasma membrane	51.51	37.49
TraesCS5D01G392700.1	Wheat	plasma membrane	43.7	37.4
GSMUA_Achr5P21940_001	Banana	extracellular, plasma membrane	47.67	37.22
TraesCS7B01G320100.2	Wheat	plasma membrane	51.51	36.75
Os06t0700700-02	Rice	plasma membrane	51.64	35.33
CDY51648	Canola	cytosol	3.29	35.29
EER96099	Sorghum	cytosol	43.01	35.08
EER90320	Sorghum	plasma membrane	51.37	35.08
Zm00001d005190_P001	Maize	plastid	42.74	34.74
EER96100	Sorghum	cytosol	44.11	34.51
CDY72630	Canola	golgi, plasma membrane, vacuole	16.3	34.2
CDY08717	Canola	cytosol, nucleus, plasma membrane	72.88	34.12
Zm00001d014669_P007	Maize	plasma membrane	51.1	33.94
Zm00001d005189_P001	Maize	plasma membrane	43.84	33.2
Os07t0232900-01	Rice	cytosol, nucleus, plasma membrane	44.79	32.57
Solyc07g009130.2.1	Tomato	plastid	56.85	31.87
CDY26408	Canola	golgi, nucleus, plasma membrane	7.53	31.79
CDY67922	Canola	cytosol	9.32	28.57
Zm00001d019226_P003	Maize	cytosol	34.52	28.22
CDY67984	Canola	cytosol, peroxisome, plasma membrane	9.04	26.94
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	5.34	23.35
CDX91834	Canola	cytosol, peroxisome, plasma membrane	24.25	20.63
CDX75636	Canola	mitochondrion	22.33	19.95
CDX69288	Canola	plastid	22.19	19.78
CDX92394	Canola	plastid	22.47	18.53
CDY16605	Canola	plastid	22.47	18.53
CDY46080	Canola	plastid	16.85	18.22
CDY39400	Canola	cytosol	24.66	18.02
CDY50771	Canola	cytosol	24.52	18.01
CDX93870	Canola	endoplasmic reticulum, plasma membrane	17.81	17.81
CDY50396	Canola	cytosol	23.7	17.78
CDY49160	Canola	cytosol	23.56	17.68
CDY34353	Canola	mitochondrion	24.38	17.25
CDX75363	Canola	plastid	21.92	17.08
CDY25498	Canola	mitochondrion	24.11	17.02
CDX68986	Canola	plastid	21.78	16.99
CDY69037	Canola	cytosol	7.81	9.76
CDY67659	Canola	cytosol	7.81	9.58
CDY51646	Canola	cytosol, plasma membrane, vacuole	2.33	8.72
CDY51690	Canola	cytosol, plasma membrane, vacuole	0.68	2.92

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078BV31	InterPro:ATPase_P-typ_P_site
InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:CDX68625	ProteinID:CDX68625	ProteinID:CDX68625.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019829	EnsemblPlantsGene:GSBRNA2T00130270001	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	InterPro:IPR023299
InterPro:P-typ_ATPase_IB	PFAM:PF00122	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00943	ScanProsite:PS00154
PANTHER:PTHR43338	InterPro:P_typ_ATPase	SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR01494
TIGRFAMs:TIGR01512	TIGRFAMs:TIGR01525	TMHMM:TMhelix	UniParc:UPI0004EED54A	SEG:seg	:

Description

BnaC01g08280D

Coordinates

chrLK031789:-:239897..242735

Molecular Weight (calculated)

78667.7 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.116

Length

730 amino acids

Sequence
(BLAST)

001: MRDYTEAAAV VFLFTIAEWL QSRASYRASA VMQSLMSLAP QKAVIAETGE EVEVDELKIN TVIAVKAGET IPIDGVVVDG NCEVDEKTLT GEAFPVPKLR
101: DSTVWAGTIN LNGYITVKTT ALAEDCVVAK MAKLVEESQN SKTETQRFID ECSKYYTPAI ILISLCFVVI PFALKVHNMK HWLHLALVVL VSACPCGLIL
201: STPVASFCAL TKAATSGLLI KEADYLETLA KIKTVAFDKT GTITRGEFIV MDFKSLSRDI SLHRLLYWVS SVESKSSHPM AAALLDYAKS VSVEPKPESV
301: EDYQNFPGEG IFGKIDGKEV YIGNKRIASR AGCSSVPDID VDTKGGKTVG YVYLGETLAG VFNLSDACRS GVAQAMKELK SMGIKTAMLT GDNQASAMHA
401: QEQLGNVMDV VHAELLPEGK SQIIKEFKRE GPTAMVGDGL NDAPALATAD IGISMGVSGS ALATETGHII LMSNDIRRIP QAIRLARRGK RKVVENVVLS
501: ITMKGAILAL AFAGHPLIWA AVLADVGTCL LVILNSMLLL RDEHVPGGKC HRAEKGEGDV VGDMEAGLLP KHCKSGCCGK EKQEVVMKPA KTSSGHGHSG
601: CCDKKHKDDV MIVRKSCESR CCGDKIQQQP NQDEVKQSCH NKAGELKEIR LDLGDSDCKS GSPLVKGCCS RPDADPVVAS LKVKSDGSCS ESSRKGNNEE
701: AYCEVKTNES NCSSRERSHN HSHSHSHHHE

Best Arabidopsis Sequence Match ( AT2G19110.1 )
(BLAST)

0001: MALQNKEEEK KKVKKLQKSY FDVLGICCTS EVPIIENILK SLDGVKEYSV IVPSRTVIVV HDSLLISPFQ IAKALNEARL EANVRVNGET SFKNKWPSPF
0101: AVVSGLLLLL SFLKFVYSPL RWLAVAAVAA GIYPILAKAF ASIKRPRIDI NILVIITVIA TLAMQDFMEA AAVVFLFTIS DWLETRASYK ATSVMQSLMS
0201: LAPQKAIIAE TGEEVEVDEV KVDTVVAVKA GETIPIDGIV VDGNCEVDEK TLTGEAFPVP KQRDSTVWAG TINLNGYICV KTTSLAGDCV VAKMAKLVEE
0301: AQSSKTKSQR LIDKCSQYYT PAIILVSACV AIVPVIMKVH NLKHWFHLAL VVLVSGCPCG LILSTPVATF CALTKAATSG LLIKSADYLD TLSKIKIVAF
0401: DKTGTITRGE FIVIDFKSLS RDINLRSLLY WVSSVESKSS HPMAATIVDY AKSVSVEPRP EEVEDYQNFP GEGIYGKIDG NDIFIGNKKI ASRAGCSTVP
0501: EIEVDTKGGK TVGYVYVGER LAGFFNLSDA CRSGVSQAMA ELKSLGIKTA MLTGDNQAAA MHAQEQLGNV LDVVHGDLLP EDKSRIIQEF KKEGPTAMVG
0601: DGVNDAPALA TADIGISMGI SGSALATQTG NIILMSNDIR RIPQAVKLAR RARRKVVENV CLSIILKAGI LALAFAGHPL IWAAVLVDVG TCLLVIFNSM
0701: LLLREKKKIG NKKCYRASTS KLNGRKLEGD DDYVVDLEAG LLTKSGNGQC KSSCCGDKKN QENVVMMKPS SKTSSDHSHP GCCGDKKEEK VKPLVKDGCC
0801: SEKTRKSEGD MVSLSSCKKS SHVKHDLKMK GGSGCCASKN EKGKEVVAKS CCEKPKQQVE SVGDCKSGHC EKKKQAEDIV VPVQIIGHAL THVEIELQTK
0901: ETCKTSCCDS KEKVKETGLL LSSENTPYLE KGVLIKDEGN CKSGSENMGT VKQSCHEKGC SDEKQTGEIT LASEEETDDQ DCSSGCCVNE GTVKQSFDEK
1001: KHSVLVEKEG LDMETGFCCD AKLVCCGNTE GEVKEQCRLE IKKEEHCKSG CCGEEIQTGE ITLVSEEETE STNCSTGCCV DKEEVTQTCH EKPASLVVSG
1101: LEVKKDEHCE SSHRAVKVET CCKVKIPEAC ASKCRDRAKR HSGKSCCRSY AKELCSHRHH HHHHHHHHHV SA

Arabidopsis Description

HMA4Putative cadmium/zinc-transporting ATPase HMA4 [Source:UniProtKB/Swiss-Prot;Acc:O64474]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.