CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67640
CDX72154
CDX76052
CDY00957
CDY08589
CDY32007
CDY43346
CDY71670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44790.1	CDY00957	AT1G66240.1	17223078
AT5G44790.1	CDY08589	AT1G66240.1	17223078
AT5G44790.1	CDX67640	AT3G56240.1	17223078
AT5G44790.1	CDX72154	AT3G56240.1	17223078
AT5G44790.1	CDX76052	AT3G56240.1	17223078
AT5G44790.1	CDY32007	AT3G56240.1	17223078
AT5G44790.1	CDY43346	AT3G56240.1	17223078
AT5G44790.1	CDY71670	AT3G56240.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39400	Canola	cytosol	99.2	98.7
AT5G44790.1	Thale cress	cytosol	92.76	92.11
CDY67984	Canola	cytosol, peroxisome, plasma membrane	22.23	90.2
CDY69037	Canola	cytosol	50.6	86.13
CDY67659	Canola	cytosol	50.6	84.54
CDY26408	Canola	golgi, nucleus, plasma membrane	13.88	79.77
VIT_01s0011g01360.t01	Wine grape	cytosol	77.77	77.3
KRH58516	Soybean	cytosol	75.75	75.75
KRH12191	Soybean	cytosol	75.86	75.7
KRH37212	Soybean	cytosol	74.55	75.15
KRH42397	Soybean	cytosol	75.05	75.05
Solyc02g068490.2.1	Tomato	cytosol	74.65	73.98
PGSC0003DMT400024409	Potato	cytosol	74.55	73.95
GSMUA_Achr8P06970_001	Banana	cytosol	66.0	69.49
EES06348	Sorghum	cytosol	68.41	68.2
GSMUA_Achr5P26800_001	Banana	cytosol	64.19	68.16
TraesCS6D01G146500.1	Wheat	cytosol	68.21	67.94
TraesCS6A01G156900.1	Wheat	cytosol	68.11	67.9
Os02t0172600-00	Rice	cytosol	68.11	67.63
Zm00001d053783_P001	Maize	plasma membrane	67.61	67.33
TraesCS7A01G480100.1	Wheat	cytosol	67.71	67.23
TraesCS6B01G184800.1	Wheat	cytosol	65.69	67.18
KXG20553	Sorghum	plasma membrane	67.81	66.93
Os06t0665800-01	Rice	cytosol	67.5	66.9
TraesCS7D01G467100.1	Wheat	cytosol	67.3	66.83
TraesCS7B01G382300.1	Wheat	cytosol	67.2	66.73
Zm00001d027860_P001	Maize	plasma membrane	11.27	66.67
Zm00001d011553_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	11.97	65.03
HORVU7Hr1G108890.1	Barley	cytosol, mitochondrion	64.99	63.15
Zm00001d046953_P002	Maize	cytosol, endoplasmic reticulum, plasma membrane	62.78	60.35
HORVU6Hr1G031960.1	Barley	plastid	29.88	51.74
CDX91834	Canola	cytosol, peroxisome, plasma membrane	41.65	48.25
CDY49160	Canola	cytosol	45.17	46.15
CDY50396	Canola	cytosol	45.07	46.04
CDY25498	Canola	mitochondrion	45.37	43.62
CDY34353	Canola	mitochondrion	45.27	43.6
CDX93870	Canola	endoplasmic reticulum, plasma membrane	29.98	40.82
CDY16605	Canola	plastid	27.77	31.19
CDX92394	Canola	plastid	27.67	31.07
CDY51647	Canola	golgi, plasma membrane, vacuole	10.76	30.92
CDX68986	Canola	plastid	27.77	29.49
CDX75363	Canola	plastid	27.57	29.24
CDY28160	Canola	cytosol	20.82	27.31
CDX68627	Canola	cytosol, plasma membrane, vacuole	20.82	27.31
CDY69827	Canola	plasma membrane	17.1	26.98
CDY72630	Canola	golgi, plasma membrane, vacuole	9.36	26.72
CDY67922	Canola	cytosol	6.24	26.05
CDY67923	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	4.23	25.15
CDY69511	Canola	plasma membrane	18.01	25.0
CDX68625	Canola	plasma membrane	18.01	24.52
CDY30170	Canola	cytosol, peroxisome, plasma membrane	21.53	24.46
CDY62400	Canola	plasma membrane	21.33	24.31
CDY51690	Canola	cytosol, plasma membrane, vacuole	3.92	22.81
CDY51646	Canola	cytosol, plasma membrane, vacuole	4.43	22.56
CDX69288	Canola	plastid	17.81	21.61
CDX75636	Canola	mitochondrion	17.71	21.54
CDY46080	Canola	plastid	14.39	21.19
CDY28206	Canola	plasma membrane	15.29	21.08
CDX68623	Canola	cytosol, endoplasmic reticulum, plasma membrane	11.57	21.06
CDY51090	Canola	cytosol	20.82	19.03
CDY36489	Canola	cytosol	20.52	17.75
CDY08717	Canola	cytosol, nucleus, plasma membrane	20.72	13.21
CDY51648	Canola	cytosol	0.4	5.88

Protein Annotations

Gene3D:2.70.150.20	MapMan:24.1.2.1.1	Gene3D:3.30.70.100	Gene3D:3.40.1110.10	Gene3D:3.40.50.1000	GO:A0A078IL82
UniProt:A0A078IL82	InterPro:ATPase_P-typ_P_site	InterPro:ATPase_P-typ_TM_dom_sf	InterPro:ATPase_P-typ_cyto_dom_N	InterPro:ATPase_P-typ_transduc_dom_A_sf	EnsemblPlants:CDY50771
ProteinID:CDY50771	ProteinID:CDY50771.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019829	GO:GO:0030001	GO:GO:0046872
GO:GO:0099132	EnsemblPlantsGene:GSBRNA2T00097467001	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:HMA_Cu_ion-bd	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:Heavy-metal-associated_CS	InterPro:IPR006121	InterPro:IPR023214	InterPro:IPR023299	InterPro:P-typ_ATPase_IB
PFAM:PF00122	PFAM:PF00403	PFAM:PF00702	PRINTS:PR00119	PRINTS:PR00120	ScanProsite:PS00154
ScanProsite:PS01047	PFscan:PS50846	PANTHER:PTHR43520	PANTHER:PTHR43520:SF14	InterPro:P_typ_ATPase	SUPFAM:SSF55008
SUPFAM:SSF56784	SUPFAM:SSF81653	SUPFAM:SSF81665	TIGRFAMs:TIGR00003	TIGRFAMs:TIGR01494	TIGRFAMs:TIGR01525
TMHMM:TMhelix	UniParc:UPI0004EDD03A	SEG:seg	:	:	:

Description

BnaC07g18200DBnaC07g18200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL82]

Coordinates

chrLK032938:-:39521..43593

Molecular Weight (calculated)

106323.0 Da

IEP (calculated)

5.007

GRAVY (calculated)

0.277

Length

994 amino acids

Sequence
(BLAST)

001: MAPSRRDLQL TPLSGDSAAE IGAMEEVRLL DSYDSLSKIE EGSGHSGLRK IQVGVTGMTC AACSNSVEGA LMSVNGVFKA SVALLQNRAD VLFDPNLVKE
101: EDIKEAIEDA GFEAEILAEP VTSGTKTQAT LVGQFTIGGM TCAACVNSVE GILRDLPGVK RAVVALATSL GEVEYDPNVI SKDDIVTAIV DAGFEGSLVQ
201: SNQQDKLLLR VEGVLNELDA QVLEGILTRL NGVRQFRLDR ITGELELVFD PEVVSSRSLV DGIEGEGYGK FKLRVMSPYE RLTSKDTGEA SNMFRRFISS
301: LSLSIPLFFI QVICPHIALF DTVLVWRCGP FMVGDWLKWA LVSVIQFVIG KRFYVAAWRA LRNGSTNMDV LVALGTSASY FYSVGALLYG AVTGFWSPTY
401: FDASAMLITF VLLGKYLESL AKGKTSDAMK KLVQLTPATA ILIEGKGRER EIDALLIHPG DSLKVLPGGK IPADGVVVWG SSYVNESMVT GESVPVSKEV
501: DSPVIGGTIN MHGVLHIKAT KVGSDAVLSQ IISLVETAQM SKAPIQKFAD YVASIFVPVV ITLALFTLVG WSIGGAVGAY PDEWLPQNGT HFVFSLMFSI
601: SVVVIACPCA LGLATPTAVM VATGVGATNG VLIKGGDALE KAHKVKYVIF DKTGTLTQGK ATVTTAKVFS EMDRGEFLTL VASAEASSEH PLAKAIVEYA
701: RHFHFFDESA EDGDTSNKVS QNAGWLLDTS DFSALPGKGI QCLVNNKLIL VGNRKLMSEN SITIPDHVEK FVEELEESAK TGVIVAYSGQ LVGVMGVADP
801: LKREAAVVVE GLLRMGVRPI MVTGDNWRTA RAVAKEVGIE DVRAEVMPAG KAEVIRSLQK DGSTVAMVGD GINDSPALAA ADVGMAIGAG TDVAIEAADY
901: VLMRNNLEDV ITAIDLSRKT LTRIRLNYVF AMAYNVVSIP IAAGVFFPVL RVQLPPWAAG ACMALSSVSV VCSSLLLRRY KKPRLTTILE ITKE

Best Arabidopsis Sequence Match ( AT5G44790.1 )
(BLAST)

0001: MAPSRRDLQL TPVTGGSSSQ ISDMEEVGLL DSYHNEANAD DILTKIEEGR DVSGLRKIQV GVTGMTCAAC SNSVEAALMN VNGVFKASVA LLQNRADVVF
0101: DPNLVKEEDI KEAIEDAGFE AEILAEEQTQ ATLVGQFTIG GMTCAACVNS VEGILRDLPG VKRAVVALST SLGEVEYDPN VINKDDIVNA IEDAGFEGSL
0201: VQSNQQDKLV LRVDGILNEL DAQVLEGILT RLNGVRQFRL DRISGELEVV FDPEVVSSRS LVDGIEEDGF GKFKLRVMSP YERLSSKDTG EASNMFRRFI
0301: SSLVLSIPLF FIQVICPHIA LFDALLVWRC GPFMMGDWLK WALVSVIQFV IGKRFYVAAW RALRNGSTNM DVLVALGTSA SYFYSVGALL YGAVTGFWSP
0401: TYFDASAMLI TFVLLGKYLE SLAKGKTSDA MKKLVQLTPA TAILLTEGKG GKLVGEREID ALLIQPGDTL KVHPGAKIPA DGVVVWGSSY VNESMVTGES
0501: VPVSKEVDSP VIGGTINMHG ALHMKATKVG SDAVLSQIIS LVETAQMSKA PIQKFADYVA SIFVPVVITL ALFTLVGWSI GGAVGAYPDE WLPENGTHFV
0601: FSLMFSISVV VIACPCALGL ATPTAVMVAT GVGATNGVLI KGGDALEKAH KVKYVIFDKT GTLTQGKATV TTTKVFSEMD RGEFLTLVAS AEASSEHPLA
0701: KAIVAYARHF HFFDESTEDG ETNNKDLQNS GWLLDTSDFS ALPGKGIQCL VNEKMILVGN RKLMSENAIN IPDHVEKFVE DLEESGKTGV IVAYNGKLVG
0801: VMGIADPLKR EAALVVEGLL RMGVRPIMVT GDNWRTARAV AKEVGIEDVR AEVMPAGKAD VIRSLQKDGS TVAMVGDGIN DSPALAAADV GMAIGAGTDV
0901: AIEAADYVLM RNNLEDVITA IDLSRKTLTR IRLNYVFAMA YNVVSIPIAA GVFFPVLRVQ LPPWAAGACM ALSSVSVVCS SLLLRRYKKP RLTTVLKITT
1001: E

Arabidopsis Description

RAN1Copper-transporting ATPase RAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.