CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39400
CDY50771
CDY67659
CDY69037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56240.1	CDY39400	AT5G44790.1	17223078
AT3G56240.1	CDY50771	AT5G44790.1	17223078
AT3G56240.1	CDY67659	AT5G44790.1	17223078
AT3G56240.1	CDY69037	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71670	Canola	cytosol	79.37	95.24
AT3G56240.1	Thale cress	cytosol	91.27	95.04
CDX72154	Canola	cytosol	77.78	93.33
CDX76052	Canola	cytosol	88.1	80.43
CDY04920	Canola	cytosol, plastid	48.41	79.22
CDY00957	Canola	cytosol, plastid	46.83	77.63
CDY08589	Canola	cytosol, plastid	46.03	76.32
VIT_13s0074g00770.t01	Wine grape	cytosol	50.0	73.26
PGSC0003DMT400050141	Potato	cytosol, plastid	60.32	71.7
KRH34745	Soybean	endoplasmic reticulum	44.44	69.14
Solyc11g007200.1.1	Tomato	extracellular	61.9	69.03
CDY32007	Canola	plastid	96.83	65.95
CDY43346	Canola	cytosol	85.71	63.53
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	48.41	51.69
KRG92037	Soybean	cytosol	42.86	43.9
CDY55410	Canola	cytosol	23.02	22.83
CDX94814	Canola	cytosol	19.05	17.14
CDY07583	Canola	cytosol	25.4	13.17
CDY67353	Canola	cytosol, plastid	25.4	12.55
CDX77196	Canola	plastid	26.19	12.45
CDY31723	Canola	plastid	26.19	12.45
CDY52751	Canola	cytosol	24.6	12.4
CDX73547	Canola	cytosol, plastid	24.6	12.25
CDX91358	Canola	cytosol	25.4	11.81
CDX74966	Canola	cytosol	25.4	11.76
CDY69094	Canola	cytosol	10.32	11.61
CDY18449	Canola	cytosol	24.6	11.57
CDX93383	Canola	cytosol	23.81	11.28
CDY68400	Canola	plastid	25.4	11.0
CDY04859	Canola	cytosol	24.6	10.16
CDY10437	Canola	cytosol, plastid	24.6	9.78
CDY55409	Canola	nucleus	0.79	0.69

Protein Annotations

EnsemblPlants:CDX67640	EnsemblPlantsGene:GSBRNA2T00098799001	Gene3D:3.30.70.100	GO:A0A078BSQ3	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF271	PFAM:PF00403	PFscan:PS50846	ProteinID:CDX67640
ProteinID:CDX67640.1	SEG:seg	SUPFAM:SSF55008	UniParc:UPI0004EF026D	MapMan:25.5.2.3	:

Description

BnaA07g16800D

Coordinates

chrLK031787:-:1460232..1461392

Molecular Weight (calculated)

13571.1 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.529

Length

126 amino acids

Sequence
(BLAST)

001: MQTVVLKVGM SCQGCVGAVN RVLGKMEGVE SFDIDIKEQK VTVKGNVEPE AVFQTVSKTG KKTSYWPVEA EAEPKAEAEP KAEAVTETKT EAETKTEAET
101: KIEAKVDAKA DVEPKLAEAE TKPSEV

Best Arabidopsis Sequence Match ( AT3G56240.1 )
(BLAST)

001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V

Arabidopsis Description

CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.