CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39400
CDY50771
CDY67659
CDY69037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56240.1	CDY39400	AT5G44790.1	17223078
AT3G56240.1	CDY50771	AT5G44790.1	17223078
AT3G56240.1	CDY67659	AT5G44790.1	17223078
AT3G56240.1	CDY69037	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67640	Canola	cytosol	65.95	96.83
AT3G56240.1	Thale cress	cytosol	61.62	94.21
CDY71670	Canola	cytosol	52.97	93.33
CDX72154	Canola	cytosol	51.89	91.43
Bra003234.1-P	Field mustard	cytosol, plastid	61.62	89.76
CDY04920	Canola	cytosol, plastid	33.51	80.52
CDX76052	Canola	cytosol	59.46	79.71
CDY00957	Canola	cytosol, plastid	31.89	77.63
CDY08589	Canola	cytosol, plastid	31.35	76.32
KRH34745	Soybean	endoplasmic reticulum	31.35	71.6
VIT_13s0074g00770.t01	Wine grape	cytosol	32.97	70.93
PGSC0003DMT400050141	Potato	cytosol, plastid	40.54	70.75
Solyc11g007200.1.1	Tomato	extracellular	41.08	67.26
CDY43346	Canola	cytosol	58.92	64.12
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	37.3	58.47
KRG92037	Soybean	cytosol	30.27	45.53
CDY55410	Canola	cytosol	15.68	22.83
CDX94814	Canola	cytosol	13.51	17.86
CDY07583	Canola	cytosol	17.84	13.58
CDY67353	Canola	cytosol, plastid	17.84	12.94
CDY52751	Canola	cytosol	17.3	12.8
CDX73547	Canola	cytosol, plastid	17.3	12.65
CDY69094	Canola	cytosol	7.57	12.5
CDY31723	Canola	plastid	17.84	12.45
CDX77196	Canola	plastid	17.84	12.45
CDX91358	Canola	cytosol	17.84	12.18
CDX74966	Canola	cytosol	17.84	12.13
CDY18449	Canola	cytosol	17.3	11.94
CDX93383	Canola	cytosol	16.76	11.65
CDY68400	Canola	plastid	17.84	11.34
CDY04859	Canola	cytosol	17.3	10.49
CDY10437	Canola	cytosol, plastid	16.76	9.78
CDY55409	Canola	nucleus	1.08	1.38

Protein Annotations

MapMan:25.5.2.3	Gene3D:3.30.70.100	GO:A0A078H3F2	UniProt:A0A078H3F2	EnsemblPlants:CDY32007	ProteinID:CDY32007
ProteinID:CDY32007.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150
GO:GO:0030001	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00050828001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF271	SUPFAM:SSF55008	UniParc:UPI0004EEA01C
SEG:seg	:	:	:	:	:

Description

BnaC06g15850DBnaC06g15850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3F2]

Coordinates

chrLK032284:-:107781..109198

Molecular Weight (calculated)

20109.1 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.185

Length

185 amino acids

Sequence
(BLAST)

001: MCTAIRPHSP SFLCTSSFGL LNTPFLPFIK LQRSLIPLSN SDHLSQRLLI FVSSYIVAMS QTVVLKVGMS CQGCVGAVNR VLGKMDGVES FDIDIKEQKV
101: TVKGNVEPEA VFQTVSKTGK KTSYWPVEAE AEPKAEAEAK AEAVTETKTE AETKTEAETK IETKVDAKAD VEPKLAEAET KPSQV

Best Arabidopsis Sequence Match ( AT3G56240.1 )
(BLAST)

001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V

Arabidopsis Description

CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.