Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56240.1 | CDY39400 | AT5G44790.1 | 17223078 |
| AT3G56240.1 | CDY50771 | AT5G44790.1 | 17223078 |
| AT3G56240.1 | CDY67659 | AT5G44790.1 | 17223078 |
| AT3G56240.1 | CDY69037 | AT5G44790.1 | 17223078 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76052 | Canola | cytosol | 76.47 | 94.2 |
| CDY71670 | Canola | cytosol | 55.29 | 89.52 |
| AT3G56240.1 | Thale cress | cytosol | 62.94 | 88.43 |
| CDX72154 | Canola | cytosol | 54.12 | 87.62 |
| CDX67640 | Canola | cytosol | 63.53 | 85.71 |
| CDY04920 | Canola | cytosol, plastid | 35.88 | 79.22 |
| CDY00957 | Canola | cytosol, plastid | 34.71 | 77.63 |
| CDY08589 | Canola | cytosol, plastid | 34.12 | 76.32 |
| VIT_13s0074g00770.t01 | Wine grape | cytosol | 35.88 | 70.93 |
| KRH34745 | Soybean | endoplasmic reticulum | 32.94 | 69.14 |
| PGSC0003DMT400050141 | Potato | cytosol, plastid | 42.35 | 67.92 |
| Solyc11g007200.1.1 | Tomato | extracellular | 44.12 | 66.37 |
| CDY32007 | Canola | plastid | 64.12 | 58.92 |
| CDY14145 | Canola | cytosol, mitochondrion, peroxisome, plastid | 35.88 | 51.69 |
| KRG92037 | Soybean | cytosol | 31.76 | 43.9 |
| CDY55410 | Canola | cytosol | 17.06 | 22.83 |
| CDX94814 | Canola | cytosol | 13.53 | 16.43 |
| CDX77196 | Canola | plastid | 20.0 | 12.83 |
| CDY31723 | Canola | plastid | 20.0 | 12.83 |
| CDY07583 | Canola | cytosol | 18.24 | 12.76 |
| CDY67353 | Canola | cytosol, plastid | 18.82 | 12.55 |
| CDX73547 | Canola | cytosol, plastid | 18.24 | 12.25 |
| CDY52751 | Canola | cytosol | 17.65 | 12.0 |
| CDY69094 | Canola | cytosol | 7.65 | 11.61 |
| CDX91358 | Canola | cytosol | 18.24 | 11.44 |
| CDX74966 | Canola | cytosol | 18.24 | 11.4 |
| CDX93383 | Canola | cytosol | 17.65 | 11.28 |
| CDY18449 | Canola | cytosol | 17.65 | 11.19 |
| CDY68400 | Canola | plastid | 18.82 | 11.0 |
| CDY04859 | Canola | cytosol | 18.82 | 10.49 |
| CDY10437 | Canola | cytosol, plastid | 18.24 | 9.78 |
| CDY55409 | Canola | nucleus | 0.59 | 0.69 |
Protein Annotations
| MapMan:25.5.2.3 | Gene3D:3.30.70.100 | GO:A0A078I0H9 | UniProt:A0A078I0H9 | EnsemblPlants:CDY43346 | ProteinID:CDY43346 |
| ProteinID:CDY43346.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00076402001 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | PFAM:PF00403 |
| PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF271 | SUPFAM:SSF55008 | UniParc:UPI0004EE5AA9 | SEG:seg |
Description
BnaC04g25100DBnaC04g25100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0H9]
Coordinates
chrLK032553:-:200201..201623
Molecular Weight (calculated)
18519.9 Da
IEP (calculated)
4.357
GRAVY (calculated)
-0.585
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MYYQYMQTVV LKVGMSCQGC VGAVNRVLGK MEGVESFDID IKEQKVTVKG KVEPEAVFQT VSKTGKKTSY WPVEAEAEAN AEAEPKVETE TKPEAETKTE
101: GKVVEVLGAK VDATKVEPEA DVEPKLAETE TKTEGKADDE VLDAKVDPKV DAKADVEQKL VEAETKPPQV
101: GKVVEVLGAK VDATKVEPEA DVEPKLAETE TKTEGKADDE VLDAKVDPKV DAKADVEQKL VEAETKPPQV
001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V
101: VDAKADVEPK AAEAETKPSQ V
Arabidopsis Description
CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.