Factsheet for Solyc11g007200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 3
nucleus 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 22364583
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068490.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56240.1	Solyc02g068490.2.1	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050141	Potato	cytosol, plastid	86.73	92.45
TraesCS7D01G342900.1	Wheat	cytosol	51.33	75.32
TraesCS7B01G247000.1	Wheat	cytosol	51.33	75.32
EES17440	Sorghum	cytosol, plastid	57.52	74.71
Zm00001d031132_P002	Maize	cytosol	54.87	73.81
Solyc05g055310.2.1	Tomato	plastid	52.21	72.84
Os08t0205400-01	Rice	extracellular, plasma membrane	52.21	72.84
Bra007230.1-P	Field mustard	cytosol, plastid	66.37	70.75
CDX72154	Canola	cytosol	65.49	70.48
CDY71670	Canola	cytosol	65.49	70.48
GSMUA_Achr10P...	Banana	cytosol	20.35	63.89
AT3G56240.1	Thale cress	cytosol	68.14	63.64
GSMUA_Achr6P17300_001	Banana	cytosol	60.18	62.39
CDX67640	Canola	cytosol	69.03	61.9
Bra003234.1-P	Field mustard	cytosol, plastid	69.03	61.42
TraesCS7D01G429000.1	Wheat	cytosol	56.64	58.72
Zm00001d016691_P001	Maize	extracellular	56.64	57.14
TraesCS7A01G439300.1	Wheat	cytosol	54.87	56.36
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	55.75	56.25
EES06905	Sorghum	cytosol	55.75	55.75
CDX76052	Canola	cytosol	67.26	55.07
HORVU7Hr1G100230.1	Barley	cytosol	53.98	54.46
TraesCS7B01G338200.1	Wheat	cytosol	49.56	52.34
Bra014702.1-P	Field mustard	cytosol	67.26	46.06
CDY43346	Canola	cytosol	66.37	44.12
CDY32007	Canola	plastid	67.26	41.08
TraesCS7A01G335400.1	Wheat	cytosol	50.44	34.13
HORVU7Hr1G082540.3	Barley	cytosol, plastid	23.01	32.1
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	27.43	17.42
Solyc11g073020.1.1	Tomato	cytosol	30.09	13.18
Solyc10g085910.1.1	Tomato	nucleus	28.32	10.77

Protein Annotations

MapMan:25.5.2.3	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006878
GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0019725	GO:GO:0019904	GO:GO:0030001	GO:GO:0046686	GO:GO:0046872
GO:GO:0046914	GO:GO:0046916	GO:GO:0048046	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
UniProt:K4D4Y1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF271	SUPFAM:SSF55008
EnsemblPlantsGene:Solyc11g007200.1	EnsemblPlants:Solyc11g007200.1.1	UniParc:UPI000276A274	SEG:seg	:	:

Description

Copper transport protein CCH [Source:Projected from Arabidopsis thaliana (AT3G56240) UniProtKB/Swiss-Prot;Acc:O82089]

Coordinates

chr11:+:1621986..1623966

Molecular Weight (calculated)

12197.4 Da

IEP (calculated)

4.307

GRAVY (calculated)

-0.607

Length

113 amino acids

Sequence
(BLAST)

001: MSQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVIGNVEP EAVFQTVSKT GKKTSYWEEP APASAPEPET KPVEEKPVEE KPTETPAEPE
101: PKPTEEKPAE TVA

Best Arabidopsis Sequence Match ( AT3G56240.1 )
(BLAST)

001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V

Arabidopsis Description

CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.