Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- mitochondrion 2
- cytosol 2
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G56240.1 | CDY39400 | AT5G44790.1 | 17223078 |
AT3G56240.1 | CDY50771 | AT5G44790.1 | 17223078 |
AT3G56240.1 | CDY67659 | AT5G44790.1 | 17223078 |
AT3G56240.1 | CDY69037 | AT5G44790.1 | 17223078 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY71670 | Canola | cytosol | 98.1 | 98.1 |
Bra007230.1-P | Field mustard | cytosol, plastid | 98.1 | 97.17 |
AT3G56240.1 | Thale cress | cytosol | 91.43 | 79.34 |
CDY04920 | Canola | cytosol, plastid | 57.14 | 77.92 |
CDX67640 | Canola | cytosol | 93.33 | 77.78 |
CDY00957 | Canola | cytosol, plastid | 55.24 | 76.32 |
CDY08589 | Canola | cytosol, plastid | 54.29 | 75.0 |
VIT_13s0074g00770.t01 | Wine grape | cytosol | 59.05 | 72.09 |
KRH34745 | Soybean | endoplasmic reticulum | 53.33 | 69.14 |
CDX76052 | Canola | cytosol | 89.52 | 68.12 |
PGSC0003DMT400050141 | Potato | cytosol, plastid | 68.57 | 67.92 |
Solyc11g007200.1.1 | Tomato | extracellular | 70.48 | 65.49 |
CDY43346 | Canola | cytosol | 87.62 | 54.12 |
CDY32007 | Canola | plastid | 91.43 | 51.89 |
CDY14145 | Canola | cytosol, mitochondrion, peroxisome, plastid | 57.14 | 50.85 |
KRG92037 | Soybean | cytosol | 51.43 | 43.9 |
CDY55410 | Canola | cytosol | 27.62 | 22.83 |
CDX94814 | Canola | cytosol | 22.86 | 17.14 |
CDY07583 | Canola | cytosol | 29.52 | 12.76 |
CDY31723 | Canola | plastid | 31.43 | 12.45 |
CDX77196 | Canola | plastid | 31.43 | 12.45 |
CDY52751 | Canola | cytosol | 29.52 | 12.4 |
CDY67353 | Canola | cytosol, plastid | 29.52 | 12.16 |
CDX73547 | Canola | cytosol, plastid | 28.57 | 11.86 |
CDX91358 | Canola | cytosol | 30.48 | 11.81 |
CDX74966 | Canola | cytosol | 30.48 | 11.76 |
CDY69094 | Canola | cytosol | 12.38 | 11.61 |
CDY18449 | Canola | cytosol | 29.52 | 11.57 |
CDX93383 | Canola | cytosol | 28.57 | 11.28 |
CDY68400 | Canola | plastid | 30.48 | 11.0 |
CDY04859 | Canola | cytosol | 29.52 | 10.16 |
CDY10437 | Canola | cytosol, plastid | 29.52 | 9.78 |
CDY55409 | Canola | nucleus | 0.95 | 0.69 |
Protein Annotations
MapMan:25.5.2.3 | Gene3D:3.30.70.100 | GO:A0A078C7L4 | EnsemblPlants:CDX72154 | ProteinID:CDX72154 | ProteinID:CDX72154.1 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 |
EnsemblPlantsGene:GSBRNA2T00155979001 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | PFAM:PF00403 | PFscan:PS50846 |
PANTHER:PTHR22814 | PANTHER:PTHR22814:SF271 | SUPFAM:SSF55008 | UniParc:UPI0004EEB122 | : | : |
Description
BnaC08g27200D
Coordinates
chrLK031795:+:2725917..2727109
Molecular Weight (calculated)
11247.6 Da
IEP (calculated)
5.273
GRAVY (calculated)
-0.341
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTVVLKVGM SCQGCVGAVN RVLGKMEGVE SFDIDIKEQK VTVKGNVEPE AVIQTVSKTG KKTSYWPVEA EAEPKSVAKP KAEVETKTEV KVDAKADAEP
101: KLAEA
101: KLAEA
001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V
101: VDAKADVEPK AAEAETKPSQ V
Arabidopsis Description
CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.