CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10437	Canola	cytosol, plastid	90.38	82.97
CDY55409	Canola	nucleus	41.24	82.76
Bra009578.1-P	Field mustard	cytosol, plastid	91.07	80.55
CDY04859	Canola	cytosol	83.85	80.0
AT5G02600.1	Thale cress	plastid	83.16	75.86
CDY55410	Canola	cytosol	28.52	65.35
CDY00957	Canola	cytosol, plastid	12.03	46.05
CDY08589	Canola	cytosol, plastid	12.03	46.05
CDY04920	Canola	cytosol, plastid	11.68	44.16
GSMUA_Achr4P30560_001	Banana	plastid	28.87	43.52
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	30.93	42.06
EER90630	Sorghum	plastid	29.55	40.38
Zm00001d034634_P001	Maize	plastid	28.87	40.0
GSMUA_Achr7P15330_001	Banana	plastid	29.21	39.91
Os03t0819400-01	Rice	plastid	27.49	39.41
Zm00001d012973_P001	Maize	plastid	28.52	39.34
GSMUA_Achr7P10400_001	Banana	plastid	28.18	38.68
GSMUA_Achr9P03120_001	Banana	plastid	29.21	38.29
GSMUA_Achr6P34370_001	Banana	plastid	29.21	38.29
CDY52751	Canola	cytosol	32.65	38.0
CDY07583	Canola	cytosol	31.27	37.45
HORVU5Hr1G112560.1	Barley	plastid	26.46	37.2
GSMUA_Achr10P...	Banana	cytosol, plastid	22.34	36.93
TraesCS5A01G475200.1	Wheat	plastid	26.46	36.84
CDY67353	Canola	cytosol, plastid	31.96	36.47
CDX93383	Canola	cytosol	33.33	36.47
CDX73547	Canola	cytosol, plastid	31.62	36.36
CDX91358	Canola	cytosol	33.68	36.16
CDX74966	Canola	cytosol	33.68	36.03
TraesCS5B01G488200.1	Wheat	plastid	26.12	36.02
CDY18449	Canola	cytosol	32.99	35.82
CDX94814	Canola	cytosol	15.46	32.14
CDY71670	Canola	cytosol	11.0	30.48
CDX72154	Canola	cytosol	11.0	30.48
CDX77196	Canola	plastid	27.15	29.81
CDY31723	Canola	plastid	26.8	29.43
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	11.68	28.81
CDX67640	Canola	cytosol	11.0	25.4
Zm00001d038419_P001	Maize	cytosol	19.24	24.67
CDY69094	Canola	cytosol	9.28	24.11
CDX76052	Canola	cytosol	11.0	23.19
CDY43346	Canola	cytosol	11.0	18.82
CDY32007	Canola	plastid	11.34	17.84

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:A0A078JPM7	UniProt:A0A078JPM7	EnsemblPlants:CDY68400	ProteinID:CDY68400
ProteinID:CDY68400.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00074140001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF130	SUPFAM:SSF55008	UniParc:UPI0004EE839F	SEG:seg

Description

BnaAnng27140DBnaAnng27140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPM7]

Coordinates

chrLK037275:+:2736..4026

Molecular Weight (calculated)

31772.2 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.601

Length

291 amino acids

Sequence
(BLAST)

001: MLCASQASTR NICSTMDQPS QPSSSSPTVR LGGRAIDRHN PIIRDGRRFT PPPSPNHNSS SAPPSSSSTY HTPLKTRLGL ESSETTRVSK RKSKKNQFDA
101: GKSPISCFTS DTPQGSSRYL LSNPVFFDGF VDSDPIPVPI EPEITMDEDL DKTHEDRLVI NASKHLSSSS FLENKQPDFF DGFLDYDPVM SPNNPFYEST
201: KASPIASQSS HEDKDNNSSS DQVVVLRVSL HCKGCAGKVK KHLSKLKGVT SFNIDFAAKK VTVTGDVTPL AVLASISKVK NAQVWPETIQ K

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.