Factsheet for Bra009578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68400	Canola	plastid	80.55	91.07
Bra028868.1-P	Field mustard	cytosol, plastid	73.86	84.08
AT5G02600.1	Thale cress	plastid	75.99	78.37
Bra029854.1-P	Field mustard	cytosol, plastid	10.33	44.74
GSMUA_Achr4P30560_001	Banana	plastid	24.92	42.49
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	26.75	41.12
Zm00001d034634_P001	Maize	plastid	24.01	37.62
GSMUA_Achr7P15330_001	Banana	plastid	24.32	37.56
EER90630	Sorghum	plastid	24.32	37.56
Os03t0819400-01	Rice	plastid	22.8	36.95
GSMUA_Achr9P03120_001	Banana	plastid	24.92	36.94
GSMUA_Achr6P34370_001	Banana	plastid	24.92	36.94
Zm00001d012973_P001	Maize	plastid	23.4	36.49
GSMUA_Achr7P10400_001	Banana	plastid	23.1	35.85
GSMUA_Achr10P...	Banana	cytosol, plastid	19.15	35.8
Bra003142.1-P	Field mustard	cytosol, plastid	26.44	34.94
HORVU5Hr1G112560.1	Barley	plastid	21.58	34.3
Bra007008.1-P	Field mustard	cytosol, plastid	26.44	34.12
TraesCS5A01G475200.1	Wheat	plastid	21.58	33.97
TraesCS5B01G488200.1	Wheat	plastid	21.28	33.18
Bra005201.1-P	Field mustard	cytosol	26.44	32.34
Bra017191.1-P	Field mustard	cytosol	25.84	32.08
Bra007230.1-P	Field mustard	cytosol, plastid	9.73	30.19
Bra001948.1-P	Field mustard	cytosol	12.46	29.29
Bra035681.1-P	Field mustard	plastid	23.4	29.06
Bra003234.1-P	Field mustard	cytosol, plastid	9.42	24.41
Zm00001d038419_P001	Maize	cytosol	16.41	23.79
Bra014702.1-P	Field mustard	cytosol	9.73	19.39

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EnsemblPlantsGene:Bra009578	EnsemblPlants:Bra009578.1	EnsemblPlants:Bra009578.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M4CZD1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF130	SUPFAM:SSF55008	UniParc:UPI0002547D0B	SEG:seg	:	:

Description

AT5G02600 (E=3e-067) | heavy-metal-associated domain-containing protein

Coordinates

chrA10:+:17275429..17276596

Molecular Weight (calculated)

35737.7 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.723

Length

329 amino acids

Sequence
(BLAST)

001: MDQPSQPSSS SPTVRLGGRA IDRHNPIIRD GRRFTPPPSP NHNSSSAPPS SSSTYHTPLK TRLGLESSET TRVSKRKSKK SQCDAGKSSI SCFTSDTPQG
101: SSRYLLSNPV FFDGFVDSDP IPVPIEPEIT MDEDLDKTHE YRLVIKASKH LSSSSFLEKK QPDFFDGFLD YDPVMSPNNP FYESTKASPI ASQSSHEDKD
201: VSSPDNPLSE HTKASPTASQ SSLEDKDVSS PDFKFSPPQP PPPPPPPSPP PTEKDPSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSF NIDFAAKKVT
301: VTGDVTPLAV LASISKVKNA QVWPETIQK

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.