Factsheet for Bra028868.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04859	Canola	cytosol	97.23	92.13
AT5G02600.1	Thale cress	plastid	82.7	74.92
Bra009578.1-P	Field mustard	cytosol, plastid	84.08	73.86
Bra029854.1-P	Field mustard	cytosol, plastid	11.42	43.42
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	29.76	40.19
GSMUA_Achr4P30560_001	Banana	plastid	26.64	39.9
GSMUA_Achr10P...	Banana	cytosol, plastid	21.8	35.8
GSMUA_Achr7P15330_001	Banana	plastid	25.95	35.21
GSMUA_Achr7P10400_001	Banana	plastid	25.61	34.91
Zm00001d034634_P001	Maize	plastid	25.26	34.76
GSMUA_Achr9P03120_001	Banana	plastid	26.64	34.68
EER90630	Sorghum	plastid	25.26	34.27
GSMUA_Achr6P34370_001	Banana	plastid	26.3	34.23
Os03t0819400-01	Rice	plastid	23.88	33.99
Bra003142.1-P	Field mustard	cytosol, plastid	29.07	33.73
Zm00001d012973_P001	Maize	plastid	24.57	33.65
Bra007008.1-P	Field mustard	cytosol, plastid	28.37	32.16
HORVU5Hr1G112560.1	Barley	plastid	22.49	31.4
TraesCS5A01G475200.1	Wheat	plastid	22.49	31.1
Bra005201.1-P	Field mustard	cytosol	28.37	30.48
TraesCS5B01G488200.1	Wheat	plastid	22.15	30.33
Bra017191.1-P	Field mustard	cytosol	27.68	30.19
Bra001948.1-P	Field mustard	cytosol	13.84	28.57
Bra007230.1-P	Field mustard	cytosol, plastid	10.38	28.3
Bra035681.1-P	Field mustard	plastid	25.26	27.55
Bra003234.1-P	Field mustard	cytosol, plastid	10.03	22.83
Zm00001d038419_P001	Maize	cytosol	17.3	22.03
Bra014702.1-P	Field mustard	cytosol	10.73	18.79

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EnsemblPlantsGene:Bra028868	EnsemblPlants:Bra028868.1	EnsemblPlants:Bra028868.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M4EJA2	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF130	SUPFAM:SSF55008	UniParc:UPI000254369A	SEG:seg	:	:

Description

AT5G02600 (E=2e-069) | heavy-metal-associated domain-containing protein

Coordinates

chrA02:-:1687878..1688949

Molecular Weight (calculated)

31401.2 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.586

Length

289 amino acids

Sequence
(BLAST)

001: MEPSSATIRL GGRAIDRHNP IIRDGRRFTP PPSPNHNSST SSASSSTYHT PLKTRLGLES SEQPRVAKRK SKKGQCNGGK TPIGCPNSDT PHGPSRYLLS
101: NPVFFDGFVD SDPIPLPIEP EITMCDELDK IHEDRLVINA SKHLSSSSFL EKKQPDFFDG FLDYDPVMSS DNPFSEPTKA SPTASQSSLA DQDVSSPDLK
201: FSPPPPPSPP PPEKSSSSDQ VVILRVSLHC KGCAGKVKKH LSKLKGVTSF KIDFAAKKVT VTGDVTPLTV LSTISKVKNA QFWPEIIKK

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.