Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 3
- mitochondrion 2
- nucleus 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra025102.1-P | |
| Bra027573.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56240.1 | Bra025102.1-P | AT5G44790.1 | 17223078 |
| AT3G56240.1 | Bra027573.1-P | AT5G44790.1 | 17223078 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76052 | Canola | cytosol | 83.03 | 99.28 |
| Bra007230.1-P | Field mustard | cytosol, plastid | 58.18 | 90.57 |
| AT3G56240.1 | Thale cress | cytosol | 64.85 | 88.43 |
| Bra003234.1-P | Field mustard | cytosol, plastid | 64.85 | 84.25 |
| Bra029854.1-P | Field mustard | cytosol, plastid | 34.55 | 75.0 |
| VIT_13s0074g00770.t01 | Wine grape | cytosol | 36.97 | 70.93 |
| PGSC0003DMT400050141 | Potato | cytosol, plastid | 45.45 | 70.75 |
| KRH34745 | Soybean | endoplasmic reticulum | 33.33 | 67.9 |
| Solyc11g007200.1.1 | Tomato | extracellular | 46.06 | 67.26 |
| KRG92037 | Soybean | cytosol | 32.12 | 43.09 |
| Bra001948.1-P | Field mustard | cytosol | 13.94 | 16.43 |
| Bra007008.1-P | Field mustard | cytosol, plastid | 19.39 | 12.55 |
| Bra035681.1-P | Field mustard | plastid | 20.0 | 12.45 |
| Bra003142.1-P | Field mustard | cytosol, plastid | 18.79 | 12.45 |
| Bra017191.1-P | Field mustard | cytosol | 18.79 | 11.7 |
| Bra005201.1-P | Field mustard | cytosol | 18.79 | 11.52 |
| Bra028868.1-P | Field mustard | cytosol, plastid | 18.79 | 10.73 |
| Bra009578.1-P | Field mustard | cytosol, plastid | 19.39 | 9.73 |
Protein Annotations
| MapMan:25.5.2.3 | Gene3D:3.30.70.100 | EnsemblPlantsGene:Bra014702 | EnsemblPlants:Bra014702.1 | EnsemblPlants:Bra014702.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom |
| InterPro:HMA_dom_sf | InterPro:IPR006121 | UniProt:M4DDY3 | PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 |
| PANTHER:PTHR22814:SF271 | SUPFAM:SSF55008 | UniParc:UPI0002544795 | SEG:seg | : | : |
Description
AT3G56240 (E=3e-031) CCH | CCH (COPPER CHAPERONE); copper chaperone
Coordinates
chrA04:+:2357220..2357855
Molecular Weight (calculated)
17889.1 Da
IEP (calculated)
4.357
GRAVY (calculated)
-0.601
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTVVLKVGM SCQGCVGAVN RVLGKMEGVE SFDIDIKEQK VTVKGRVEPE AVFQTVSKTG KKTSYWPVET EAEPKAEVEP KAETETNAEA ETKTEGKVVE
101: VLDAKVDATK VEPEANVEPK FAETETKTEG KADDEVLDAK VDPKVDAKAD VEPKLVEAET KPPQV
101: VLDAKVDATK VEPEANVEPK FAETETKTEG KADDEVLDAK VDPKVDAKAD VEPKLVEAET KPPQV
001: MAQTVVLKVG MSCQGCVGAV NRVLGKMEGV ESFDIDIKEQ KVTVKGNVEP EAVFQTVSKT GKKTSYWPVE AEAEPKAEAD PKVETVTETK TEAETKTEAK
101: VDAKADVEPK AAEAETKPSQ V
101: VDAKADVEPK AAEAETKPSQ V
Arabidopsis Description
CCHCopper transport protein CCH [Source:UniProtKB/Swiss-Prot;Acc:O82089]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.