CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12191
KRH37212
KRH42397
KRH58516

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56240.1	KRH12191	AT5G44790.1	17223078
AT3G56240.1	KRH37212	AT5G44790.1	17223078
AT3G56240.1	KRH42397	AT5G44790.1	17223078
AT3G56240.1	KRH58516	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34745	Soybean	endoplasmic reticulum	63.41	96.3
Solyc05g055310.2.1	Tomato	plastid	52.03	79.01
PGSC0003DMT400060399	Potato	cytosol, plastid	52.03	79.01
VIT_13s0074g00770.t01	Wine grape	cytosol	51.22	73.26
Bra007230.1-P	Field mustard	cytosol, plastid	44.72	51.89
CDX72154	Canola	cytosol	43.9	51.43
CDY71670	Canola	cytosol	43.9	51.43
AT3G56240.1	Thale cress	cytosol	43.9	44.63
KRH71640	Soybean	cytosol, mitochondrion, plastid	46.34	43.85
KRH33278	Soybean	cytosol	46.34	43.85
CDX67640	Canola	cytosol	43.9	42.86
Bra003234.1-P	Field mustard	cytosol, plastid	43.9	42.52
CDX76052	Canola	cytosol	43.09	38.41
Bra014702.1-P	Field mustard	cytosol	43.09	32.12
CDY43346	Canola	cytosol	43.9	31.76
CDY32007	Canola	plastid	45.53	30.27
KRH60302	Soybean	cytosol, extracellular	26.02	24.24
KRH48431	Soybean	cytosol	26.02	23.7
KRH41596	Soybean	cytosol	24.39	22.73
KRH22990	Soybean	cytosol	23.58	21.8
KRH39252	Soybean	cytosol	23.58	21.48
KRH58299	Soybean	mitochondrion	26.02	19.28
KRH42188	Soybean	cytosol, plastid	26.02	19.05
KRH43920	Soybean	cytosol	24.39	17.96
KRH10325	Soybean	plastid	26.83	17.84
KRH10507	Soybean	plastid	23.58	16.96
KRH19750	Soybean	plastid	34.15	15.22
KRH29875	Soybean	plastid	29.27	15.0
KRH25010	Soybean	plastid	28.46	14.58
KRH67578	Soybean	plastid	34.15	14.48
KRH32346	Soybean	plastid	32.52	14.29
KRG95861	Soybean	plastid	33.33	14.14

Protein Annotations

MapMan:25.5.2.3	Gene3D:3.30.70.100	UniProt:A0A0R0EEE4	EMBL:ACUP02012724	EnsemblPlantsGene:GLYMA_20G187100	GO:GO:0003674
GO:GO:0005488	GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	EnsemblPlants:KRG92037	ProteinID:KRG92037	ProteinID:KRG92037.1	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF172	SUPFAM:SSF55008	UniParc:UPI0006EDB802	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:42563369..42566389

Molecular Weight (calculated)

13564.4 Da

IEP (calculated)

7.890

GRAVY (calculated)

0.091

Length

123 amino acids

Sequence
(BLAST)

001: MIYMATFTFS SNDEPYYCSR FIIYVSDFLL CSRPYFPSLP FLKFKTVVLK VGMSCEGCVG AVKRVLGKLD GVESYDIDLK EQKVVVKGNV QPDTVLATVS
101: KTGKKTTFWE GEAAASETST ATA

Best Arabidopsis Sequence Match ( AT1G66240.1 )
(BLAST)

001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA

Arabidopsis Description

ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.