Factsheet for Solyc05g055310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3
nucleus 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060399	Potato	cytosol, plastid	100.0	100.0
KRH34745	Soybean	endoplasmic reticulum	80.25	80.25
VIT_13s0074g00770.t01	Wine grape	cytosol	85.19	80.23
TraesCS7D01G342900.1	Wheat	cytosol	75.31	79.22
TraesCS7B01G247000.1	Wheat	cytosol	75.31	79.22
Os08t0205400-01	Rice	extracellular, plasma membrane	76.54	76.54
Zm00001d031132_P002	Maize	cytosol	77.78	75.0
EES17440	Sorghum	cytosol, plastid	77.78	72.41
GSMUA_Achr10P...	Banana	cytosol	32.1	72.22
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	80.25	58.04
GSMUA_Achr6P17300_001	Banana	cytosol	74.07	55.05
Solyc11g007200.1.1	Tomato	extracellular	72.84	52.21
KRG92037	Soybean	cytosol	79.01	52.03
Zm00001d016691_P001	Maize	extracellular	70.37	50.89
TraesCS7D01G429000.1	Wheat	cytosol	67.9	50.46
TraesCS7A01G439300.1	Wheat	cytosol	67.9	50.0
EES06905	Sorghum	cytosol	69.14	49.56
HORVU7Hr1G100230.1	Barley	cytosol	67.9	49.11
TraesCS7B01G338200.1	Wheat	cytosol	59.26	44.86
HORVU7Hr1G082540.3	Barley	cytosol, plastid	35.8	35.8
TraesCS7A01G335400.1	Wheat	cytosol	72.84	35.33
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	40.74	18.54
Solyc11g073020.1.1	Tomato	cytosol	43.21	13.57
Solyc10g085910.1.1	Tomato	nucleus	35.8	9.76

Protein Annotations

MapMan:25.5.2.3	Gene3D:3.30.70.100	EMBL:AY253832	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF172
UniProt:Q84KJ2	SUPFAM:SSF55008	EnsemblPlantsGene:Solyc05g055310.2	EnsemblPlants:Solyc05g055310.2.1	UniParc:UPI000018F518	:

Description

Copper chaperone [Source:UniProtKB/TrEMBL;Acc:Q84KJ2]

Coordinates

chr5:+:64997086..65000021

Molecular Weight (calculated)

8547.3 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.104

Length

81 amino acids

Sequence
(BLAST)

1: MSQTVVLKVG MSCEGCVGAV KRVLGKMEGV ETFDIDLKEQ KVTVKGNVQP DAVLKTVSKT GKPTSFWEAG ESAQTEAVST A

Best Arabidopsis Sequence Match ( AT1G66240.1 )
(BLAST)

001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA

Arabidopsis Description

ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.