Factsheet for GSMUA_Achr6P07500_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00300_001
GSMUA_Achr5P12290_001
GSMUA_Achr5P12300_001
GSMUA_Achr5P26800_001
GSMUA_Achr8P06970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66240.1	GSMUA_Achr1P00300_001	AT1G63440.1	16367966
AT1G66240.1	GSMUA_Achr5P12290_001	AT1G63440.1	16367966
AT1G66240.1	GSMUA_Achr5P12300_001	AT1G63440.1	16367966
AT1G66240.1	GSMUA_Achr5P26800_001	AT5G44790.1	17223078
AT1G66240.1	GSMUA_Achr8P06970_001	AT5G44790.1	17223078

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	26.79	83.33
CDY04920	Canola	cytosol, plastid	57.14	83.12
TraesCS7D01G342900.1	Wheat	cytosol	56.25	81.82
TraesCS7B01G247000.1	Wheat	cytosol	56.25	81.82
Zm00001d031132_P002	Maize	cytosol	60.71	80.95
Solyc05g055310.2.1	Tomato	plastid	58.04	80.25
PGSC0003DMT400060399	Potato	cytosol, plastid	58.04	80.25
Os08t0205400-01	Rice	extracellular, plasma membrane	58.04	80.25
EES17440	Sorghum	cytosol, plastid	61.61	79.31
Bra029854.1-P	Field mustard	cytosol, plastid	53.57	78.95
CDY00957	Canola	cytosol, plastid	53.57	78.95
CDY08589	Canola	cytosol, plastid	53.57	78.95
VIT_13s0074g00770.t01	Wine grape	cytosol	58.93	76.74
GSMUA_Achr6P17300_001	Banana	cytosol	63.39	65.14
PGSC0003DMT400050141	Potato	cytosol, plastid	58.04	61.32
AT1G66240.1	Thale cress	cytosol, plastid	54.46	57.55
Solyc11g007200.1.1	Tomato	extracellular	56.25	55.75
CDY14145	Canola	cytosol, mitochondrion, peroxisome, plastid	57.14	54.24
TraesCS7A01G335400.1	Wheat	cytosol	55.36	37.13
GSMUA_Achr1P14500_001	Banana	cytosol	30.36	25.19
GSMUA_Achr7P17730_001	Banana	cytosol, endoplasmic reticulum, plastid	26.79	22.56
GSMUA_Achr8P26110_001	Banana	cytosol	30.36	21.66
GSMUA_Achr10P...	Banana	cytosol	29.46	20.25
GSMUA_Achr10P...	Banana	cytosol, plastid	31.25	19.89
GSMUA_Achr5P04340_001	Banana	cytosol	27.68	19.87
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	36.61	19.16
GSMUA_Achr7P10400_001	Banana	plastid	35.71	18.87
GSMUA_Achr4P30560_001	Banana	plastid	32.14	18.65
GSMUA_Achr7P15330_001	Banana	plastid	34.82	18.31
GSMUA_Achr6P34370_001	Banana	plastid	34.82	17.57
GSMUA_Achr9P03120_001	Banana	plastid	32.14	16.22

Protein Annotations

EnsemblPlants:GSMUA_Achr6P07500_001	EnsemblPlants:GSMUA_Achr6T07500_001	EnsemblPlantsGene:GSMUA_Achr6G07500_001	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF172	PFAM:PF00403	PFscan:PS50846	SEG:seg
SUPFAM:SSF55008	UniParc:UPI000296668D	UniProt:M0T4Z9	MapMan:25.5.2.3	:	:

Description

Putative Copper transport protein ATOX1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G07500_001]

Coordinates

chr6:+:5083888..5086136

Molecular Weight (calculated)

11734.8 Da

IEP (calculated)

4.558

GRAVY (calculated)

-0.257

Length

112 amino acids

Sequence
(BLAST)

001: MSSGSPKSPT ESVDFCVASE ISSPSAPMAE TVVLKVGMSC EGCVGAVKRV LTKMEGVESF DVDLKEQKVT VKGNVKPEAV LQTVSKTGKK TSFWEAEPET
101: EESTSSAATN TA

Best Arabidopsis Sequence Match ( AT1G66240.1 )
(BLAST)

001: MLKDLFQAVS YQNTASLSLF QALSVVESKA MSQTVVLRVA MTCEGCVGAV KRVLGKMEGV ESFDVDIKEQ KVTVKGNVQP DAVLQTVTKT GKKTAFWEAE
101: GETAKA

Arabidopsis Description

ATX1homolog of anti-oxidant 1 [Source:TAIR;Acc:AT1G66240]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.