Factsheet for GSMUA_Achr7P17730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	63.91	52.15
GSMUA_Achr5P04340_001	Banana	cytosol	53.38	45.51
VIT_12s0055g00930.t01	Wine grape	plastid	52.63	41.92
TraesCS1A01G283600.1	Wheat	cytosol	53.38	38.17
TraesCS1B01G292800.1	Wheat	cytosol	52.63	37.63
TraesCS1D01G282700.1	Wheat	mitochondrion	51.88	37.1
PGSC0003DMT400032793	Potato	plastid	46.62	36.9
GSMUA_Achr1P14500_001	Banana	cytosol	36.84	36.3
HORVU1Hr1G072500.1	Barley	mitochondrion	51.13	35.42
Solyc01g105000.2.1	Tomato	mitochondrion, plastid	46.62	34.83
KRH58299	Soybean	mitochondrion	42.86	34.34
KRH42188	Soybean	cytosol, plastid	42.86	33.93
KRH10507	Soybean	plastid	43.61	33.92
Os08t0405700-01	Rice	mitochondrion	51.13	33.17
KRH43920	Soybean	cytosol	41.35	32.93
KXG25122	Sorghum	mitochondrion	51.13	32.23
GSMUA_Achr8P26110_001	Banana	cytosol	36.09	30.57
GSMUA_Achr10P...	Banana	cytosol	8.27	30.56
GSMUA_Achr10P...	Banana	cytosol, plastid	36.84	27.84
GSMUA_Achr6P07500_001	Banana	cytosol, plastid	22.56	26.79
GSMUA_Achr6P17300_001	Banana	cytosol	21.8	26.61
GSMUA_Achr4P30560_001	Banana	plastid	36.09	24.87
GSMUA_Achr7P15330_001	Banana	plastid	37.59	23.47
GSMUA_Achr2P16130_001	Banana	mitochondrion, plastid	37.59	23.36
Zm00001d050277_P001	Maize	mitochondrion	32.33	22.63
GSMUA_Achr9P03120_001	Banana	plastid	36.09	21.62
GSMUA_Achr6P34370_001	Banana	plastid	36.09	21.62
GSMUA_Achr7P10400_001	Banana	plastid	33.08	20.75

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150
GO:GO:0030001	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr7G17730_001	EnsemblPlants:GSMUA_Achr7P17730_001	EnsemblPlants:GSMUA_Achr7T17730_001	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M0TIG0	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF80	SUPFAM:SSF55008	UniParc:UPI000295948E	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_55.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G17730_001]

Coordinates

chr7:-:20507272..20508036

Molecular Weight (calculated)

14726.2 Da

IEP (calculated)

10.692

GRAVY (calculated)

-0.130

Length

133 amino acids

Sequence
(BLAST)

001: MVTKKQREPR PAKTTTATGT VPSRPPSNDH VFQVKPSCSL AFFLSCHVSS LFYVLLQTQM QSKGREKKVV VMRVSIHCQG CAGKVRKHIS KMEGVTSFSI
101: DLESKRVIVM GHVSPVGVLE SISKVKKAEL WPC

Best Arabidopsis Sequence Match ( AT2G28660.1 )
(BLAST)

001: MRFSDIFCSS PASTAVRHST LHHDGNVTGG RRSFQSHLRS QNPSKKKDKT VPCFSSEMPL IPIPRHLSCR NSFESPSGFR PKIASARGSD VQIRRKSSAD
101: VSDLRRSRSS LLSSSSRYLL KDHKSLKGDD KDLWLSSDRS KDLILYRDRN VTSSASSSSS SSSSSFSSSV TNVSSPAPST DDQVVVLRVS IHCKGCEGKV
201: RKHISKMEGV TSYTIDLATK KVTVVGKITP VGLVESISKV KFAQLWPSSS SPPFPHIPNY SLLKS

Arabidopsis Description

At2g28660 [Source:UniProtKB/TrEMBL;Acc:Q7XZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.