Factsheet for Solyc01g105000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

nucleus 1
plastid 3
plasma membrane 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032793	Potato	plastid	84.27	89.29
KRH58299	Soybean	mitochondrion	55.62	59.64
KRH42188	Soybean	cytosol, plastid	55.62	58.93
KRH10507	Soybean	plastid	50.56	52.63
GSMUA_Achr10P...	Banana	cytosol	47.75	52.15
VIT_12s0055g00930.t01	Wine grape	plastid	47.75	50.9
GSMUA_Achr5P04340_001	Banana	cytosol	44.38	50.64
KRH43920	Soybean	cytosol	46.07	49.1
GSMUA_Achr7P17730_001	Banana	cytosol, endoplasmic reticulum, plastid	34.83	46.62
Solyc05g055310.2.1	Tomato	plastid	18.54	40.74
TraesCS1A01G283600.1	Wheat	cytosol	41.01	39.25
TraesCS1B01G292800.1	Wheat	cytosol	40.45	38.71
TraesCS1D01G282700.1	Wheat	mitochondrion	40.45	38.71
HORVU1Hr1G072500.1	Barley	mitochondrion	41.01	38.02
Os08t0405700-01	Rice	mitochondrion	40.45	35.12
KXG25122	Sorghum	mitochondrion	39.89	33.65
Zm00001d050277_P001	Maize	mitochondrion	30.9	28.95
Solyc11g007200.1.1	Tomato	extracellular	17.42	27.43
Solyc11g073020.1.1	Tomato	cytosol	35.96	24.81
Solyc10g085910.1.1	Tomato	nucleus	32.02	19.19

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	UniProt:K4B272	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF80
SUPFAM:SSF55008	EnsemblPlantsGene:Solyc01g105000.2	EnsemblPlants:Solyc01g105000.2.1	UniParc:UPI0002768D7A	:	:

Description

No Description!

Coordinates

chr1:+:93309823..93311131

Molecular Weight (calculated)

19713.3 Da

IEP (calculated)

10.547

GRAVY (calculated)

-0.260

Length

178 amino acids

Sequence
(BLAST)

001: MNYKKLGGYK KMRGFMCHPQ FSTAVCLSCD SRSVVVPAPP RHRMSMEEHT KLINKGTRLG DVPRTLGSMP ISKRSRNVVA GSSVLTMPKR DQENGCKIVP
101: SIPYSDNSFQ VVVMRVSLHC QGCAGKVKKH LSKMEGVTSF SIDLDSKRVT VMGHLSPVSV LESISKVKRA EFWPINSC

Best Arabidopsis Sequence Match ( AT5G02600.1 )
(BLAST)

001: MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK
101: SPVSCFSSDT PQGSSRYLLS NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF EGFLDYEPVL SPDNPFSEPT
201: KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
301: LASISKVKNA QFWPEIIQK

Arabidopsis Description

NAKR1Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDS4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.